BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,199,104	2 bp→AG	intergenic (‑122/+117)	U712_11015 ← / ← U712_11020	Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,199,104	0	G	A	98.2%	332.6 / ‑3.2	110	intergenic (‑122/+118)	U712_11015/U712_11020	Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (44/63); total (45/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01
*	CP006881	2,199,105	0	A	G	98.2%	347.8 / ‑3.4	110	intergenic (‑123/+117)	U712_11015/U712_11020	Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (44/64); total (45/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01

Only 100 of 110 total aligned reads displayed.

TATGTATCCATCTCTCTACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTGCCAATAAACGCTTTATTCACTTTAATGTAAACCTTTACAAAAGAAAACGAAAACCGACGGCATTACTTGGTGCCGGCTCTGTTACTTATTTTCATTAACGATTAATAGATCCAGC  >  CP006881/2198972‑2199235

||

tatgtatCCA‑‑TCTCTACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTgat                                                                                                                             >  6:3398/1‑137 (MQ=255)

tatgtatCCA‑‑TCTCTACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTg                                                                                                                               <  2:325620/137‑1 (MQ=255)

  tgtatCCA‑‑TCTCTACTCTCCCAGTCTCGCTGTATTTTTGTCCTAGTATAGATTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTATTCAGCTGATTTTAGATAGTTGGGAAAGGCAGAGGTCttctgc                                                                                                                           >  4:394348/1‑134 (MQ=255)

      tatccatctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATgcac                                                                                                                         <  1:109273/133‑1 (MQ=255)

      acagcatctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTATATCGTTGGGAAAGGCAGAGGTCTGATgcac                                                                                                                         <  5:333982/133‑1 (MQ=255)

       atccatctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATgcaca                                                                                                                        >  5:423183/6‑138 (MQ=255)

        tccatctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATgcacac                                                                                                                       <  2:335978/135‑3 (MQ=255)

          tctctcTACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTg                                                                                                                     >  8:348372/1‑139 (MQ=255)

          catctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACt                                                                                                                      <  8:131636/136‑1 (MQ=255)

          catctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTg                                                                                                                     >  7:422858/3‑139 (MQ=255)

          catctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAAAAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTg                                                                                                                     <  1:125045/137‑1 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  8:16987/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  5:208492/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  1:400583/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  8:382200/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  7:121192/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  8:218897/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  8:117858/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  7:81807/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  3:143227/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTAAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  8:314719/1‑138 (MQ=255)

            tctctACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTAACAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGc                                                                                                                    >  7:198351/1‑138 (MQ=255)

                tACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCatt                                                                                                                >  2:6620/1‑136 (MQ=255)

                  ctctCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattcaa                                                                                                             >  2:291971/1‑134 (MQ=255)

                  ctctCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattca                                                                                                              <  5:187284/138‑5 (MQ=255)

                  ctctCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattca                                                                                                              <  3:79918/138‑5 (MQ=255)

                  ctctCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAAATGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCatt                                                                                                                <  4:386215/136‑3 (MQ=255)

                  ctctCCCAGTCTCGATGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattca                                                                                                              <  4:84211/138‑5 (MQ=255)

                     tcCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGTAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGTTCGTTGGTTAAGGCAGAGGTCTGATGGACTCTGCCattctac                                                                                                            <  8:142967/137‑7 (MQ=255)

                     tcCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattca                                                                                                              <  7:420276/135‑5 (MQ=255)

                     tcCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCattca                                                                                                              >  8:420276/1‑131 (MQ=255)

                     tcCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAAccc                                                                                                          >  8:114063/1‑137 (MQ=255)

                     tcCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAAccc                                                                                                          >  2:398607/1‑137 (MQ=255)

                       ccAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCtt                                                                                                        >  5:184883/1‑139 (MQ=255)

                       ccAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCt                                                                                                         <  4:49274/138‑1 (MQ=255)

                       ccAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTAAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCt                                                                                                         <  7:314719/138‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  1:398607/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  6:208492/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  1:304753/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  6:423183/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  6:98219/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  2:400583/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTGCCAATAAACGCTTTAtt                                                                                                    <  7:348372/139‑1 (MQ=255)

                           tctcGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTATCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  7:397323/139‑1 (MQ=255)

                               gCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTTTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATGGTTGGGAAAGGCAGAGGGCTGATGCACACTGCCATTGAACCCTTTATTGACt                                                                                                >  4:74937/1‑139 (MQ=255)

                               gCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTgatgca                                                                                                                          <  1:109159/113‑6 (MQ=255)

                               gCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    >  5:277744/1‑135 (MQ=255)

                               gCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTAtt                                                                                                    <  6:277744/135‑1 (MQ=255)

                               gCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACt                                                                                                >  1:124901/1‑139 (MQ=255)

                                ttGTCATTTTGTCCTAGTATAGCTTGTTTTATCATGAAATTGTATTGGTTCAAATAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  2:31665/138‑1 (MQ=255)

                                cTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  4:424560/139‑1 (MQ=255)

                                cTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  2:408996/139‑1 (MQ=255)

                                cTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  7:413744/139‑1 (MQ=255)

                                cTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  3:331008/139‑1 (MQ=255)

                                cTGTCTTTTTGTCCTAGTATAGCGTGGTTTATCAGGAAATTGTATTGTTTCCATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  1:438071/139‑1 (MQ=255)

                                cTGTCTTTTTGTACTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACtt                                                                                               <  2:124901/139‑1 (MQ=255)

                                       tttGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATg                                                                                          <  1:291971/137‑1 (MQ=255)

                                       tttGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGt                                                                                         >  3:130087/1‑138 (MQ=255)

                                        ttGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTa                                                                                        <  4:71179/138‑1 (MQ=255)

                                        ttGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTa                                                                                        <  3:195976/138‑1 (MQ=255)

                                        ttGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTa                                                                                        <  4:319919/138‑1 (MQ=255)

                                          gTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGTAGAGGTCTGATGCACACTGCCATTCACCCCTTTATTCTCTTTAATGTAAAc                                                                                     >  5:273115/1‑139 (MQ=255)

                                           tCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAAcc                                                                                    >  7:43816/1‑139 (MQ=255)

                                           tCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAAc                                                                                     <  7:218897/138‑1 (MQ=255)

                                           tCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTAAACCCTTTATTCACTTTAATGTAAAcc                                                                                    >  1:236127/1‑139 (MQ=255)

                                             cTAGTATAGCTTGTTTTATCAGGAAATAGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGGCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCt                                                                                   <  3:317645/138‑1 (MQ=255)

                                                      cTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaa                                                                           >  8:282988/1‑137 (MQ=255)

                                                        tGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacag                                                                        >  7:439667/1‑135 (MQ=255)

                                                        tGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacag                                                                        >  2:192559/1‑135 (MQ=255)

                                                          ttttATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTTGGAAAGGCAGAGTTCTGATGCACACTGACATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacagaa                                                                      >  5:396958/1‑133 (MQ=255)

                                                          ttttATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacagaa                                                                      >  8:355916/1‑133 (MQ=255)

                                                          ttttATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacagaa                                                                      >  3:144259/1‑133 (MQ=255)

                                                          ttttATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGAAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTAACaaaacagaa                                                                      >  5:348082/1‑133 (MQ=255)

                                                          ttttATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGAGCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACaaaacagaa                                                                      >  2:188492/1‑133 (MQ=255)

                                                               tCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAAcagaacaaaaa                                                                >  6:149582/1‑139 (MQ=255)

                                                                   gAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCgg                                                            <  4:144259/139‑2 (MQ=255)

                                                                   gAAATTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGGCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAACCCgg                                                            <  3:394348/139‑2 (MQ=255)

                                                                    aaaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCgg                                                            <  7:382200/138‑2 (MQ=255)

                                                                     atttgttttgttTCAAAAAAAAAATCTGCTTTTCTGCTGATTTTTTATCGTTGGTAACGGCAGTGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACACAACAAAAACCggc                                                           <  6:17894/136‑3 (MQ=255)

                                                                     atttgttttgttTAAATAAAAAAATCAGCTTTTCAGCTGATTTTAGTTAGTTGGGAAAGGCAGAGGTCTGATGCACTCTGCTATTGAACCCTTTATTAACTTTATTGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                          <  3:345529/137‑1 (MQ=255)

                                                                     acaggtattttTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTATATCGGTGCGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCggc                                                           <  4:357629/134‑3 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGTTCTTTGGGAACGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATTTAAACCTTAACAAAACAGAAAAAAAACCggc                                                           <  4:80069/138‑3 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGTAAAGGCAGAGGTCTGATGCACACTGCAATTCAACCCTTTATTCACTTTAATTTAAACCTTTACAAAACAGAACAAAAACCggc                                                           <  6:424497/138‑3 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                          <  3:155533/139‑1 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                          <  7:355916/139‑1 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                          <  7:312777/139‑1 (MQ=255)

                                                                     aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                          <  4:143227/139‑1 (MQ=255)

                                                                                 tCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTatatgtt                                              >  3:253771/1‑133 (MQ=255)

                                                                                            aTCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGt                                   <  7:114063/139‑1 (MQ=255)

                                                                                                gCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCt                               <  4:380602/139‑1 (MQ=255)

                                                                                                        gCTGATTTTAGATCGTTGGGAAAGGCAGAGGGCTGACGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCa                       <  4:202169/139‑1 (MQ=255)

                                                                                                          tGATTTTAGATCGTTGGTAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACACAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCa                       <  6:259418/137‑1 (MQ=255)

                                                                                                            aTTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCaca                     <  8:422858/137‑3 (MQ=255)

                                                                                                            aTTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTAATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCaca                     <  6:89655/137‑3 (MQ=255)

                                                                                                              tttAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCacaatg                  <  8:439667/138‑6 (MQ=255)

                                                                                                               ttAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTAATTTCacaatga                 <  6:389816/138‑7 (MQ=255)

                                                                                                                        tgggaaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTTTTTTCA‑CAATGATTAATAGATc      >  6:244142/5‑139 (MQ=255)

                                                                                                                        tgggaaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCA‑CAATGATTAATAGAt       <  7:114192/134‑1 (MQ=255)

                                                                                                                            aaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCA‑CAATGATTAATAGATCCAGc  <  7:282988/139‑1 (MQ=255)

                                                                                                                            aaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCA‑CAATGATTAATAGATCCAGc  <  8:43816/139‑1 (MQ=255)

||

TATGTATCCATCTCTCTACTCTCCCAGTCTCGCTGTCTTTTTGTCCTAGTATAGCTTGTTTTATCAGGAAATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTGCCAATAAACGCTTTATTCACTTTAATGTAAACCTTTACAAAAGAAAACGAAAACCGACGGCATTACTTGGTGCCGGCTCTGTTACTTATTTTCATTAACGATTAATAGATCCAGC  >  CP006881/2198972‑2199235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`