| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,186,385 | 2 bp→GC | coding (715‑716/1287 nt) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,186,385 | 0 | A | G | 98.7% | 246.9 / ‑4.9 | 78 | I239A (ATT→GCT) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (54/23); total (55/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.96e-01 | |||||||||||
| * | CP006881 | 2,186,386 | 0 | T | C | 100.0% | 252.5 / NA | 78 | I239A (ATT→GCT) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (55/23); total (55/23) | |||||||||||
TGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTGGAACCATTGCACCCGCAATAAGGAAAAACGCCGCTGAAGAAATGTCTCCAGGAACAAAAATATCGGCAGCTGTCAATTTCTGGCCGCCTGTAATAGAAACACTCGTTTGATCTTCAGAAAGCTTAACACCAAAAGCAGAAAG > CP006881/2186254‑2186509 || cgctaTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGa > 5:190185/2‑138 (MQ=255) ctatCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGaaaa > 7:94155/4‑139 (MQ=255) ctatCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGaaa > 4:87987/4‑138 (MQ=255) ctatCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTATTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGaaa > 7:210199/4‑138 (MQ=255) tatCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGaaaac > 8:399178/3‑138 (MQ=255) agcagATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAAcgcg > 8:249322/1‑138 (MQ=255) agcagATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAAcgcg > 5:221227/1‑138 (MQ=255) gATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCATTACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCt > 7:172172/1‑138 (MQ=255) aTGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATCCCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTATGGAACCATCGCGCCAGCAGCAAGGAAAAAcgcgcctg > 3:376258/1‑133 (MQ=255) aTGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTg > 6:221635/1‑138 (MQ=255) aTGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTg > 5:81503/1‑138 (MQ=255) aTGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTg > 5:232666/1‑138 (MQ=255) aTGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTg > 7:226012/1‑138 (MQ=255) ttGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGAGGCTGAAGaaa > 7:115148/1‑139 (MQ=255) gATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATg > 6:389152/1‑139 (MQ=255) ttttGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGa < 7:234980/139‑1 (MQ=255) gCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACa > 6:398581/1‑138 (MQ=255) cccccATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACaaa < 6:190185/139‑1 (MQ=255) aaGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCt > 8:3702/1‑139 (MQ=255) ggACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGt < 6:232666/139‑1 (MQ=255) ggACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGt < 6:81503/139‑1 (MQ=255) cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag > 6:399693/1‑138 (MQ=255) cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGTGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag > 4:252965/1‑138 (MQ=255) cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag > 2:344634/1‑138 (MQ=255) aataatACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTc < 8:210199/139‑1 (MQ=255) aTACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGTCTGAAGCAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTgtc > 2:407981/1‑137 (MQ=255) tACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgcc > 2:7931/1‑139 (MQ=255) ccTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATTAAATTGTGCTGTTTGGAAGCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccac < 4:48581/139‑3 (MQ=255) ccTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccac > 4:350111/1‑137 (MQ=255) tGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcag > 7:94922/1‑114 (MQ=255) tGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcag < 8:94922/116‑3 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAATGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 5:150688/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAAcgcgg < 6:270248/82‑3 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAAcgcgg > 5:270248/1‑80 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcagcag > 4:366138/1‑118 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcagcag < 3:366138/118‑1 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 6:373133/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 2:132540/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 2:364980/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 2:391274/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 1:258846/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 5:76825/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 7:394541/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 7:63393/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 5:368473/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 1:233557/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 3:287467/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAACAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAACTATCAGCAGCTGTCAGTTTCTGgccaccag > 6:283855/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGAAGCAAGGAAAAACTCGGCTGAAGAAATGTCTCAAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 3:48581/1‑137 (MQ=255) gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACAATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag > 7:367960/1‑137 (MQ=255) gTCAGAGTCGGATTTAAACCTACGTTTTTCAATACAAAACTGCTGTTTGGAACAATCGAGCCAGCAGCAAGGAAAAAAGCGGATGAAGAAATGTCTCCATGAACAAAAATATAATCACCTGTCAGAATCTGgccaccag > 5:213683/1‑137 (MQ=255) tCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTcc > 4:218827/1‑97 (MQ=255) tCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTcc < 3:218827/97‑1 (MQ=255) tCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc < 1:132540/139‑4 (MQ=255) ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc > 6:238443/1‑135 (MQ=255) ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc > 3:399070/1‑135 (MQ=255) ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc > 7:279206/1‑135 (MQ=255) tCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGa < 6:368473/139‑1 (MQ=255) aTTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAaca < 6:76825/139‑1 (MQ=255) ttAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTTAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACt > 6:31114/1‑139 (MQ=255) aCCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGtt < 8:367960/139‑1 (MQ=255) cTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTg < 8:394541/139‑1 (MQ=255) aCGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt > 1:222138/1‑139 (MQ=255) aCGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt > 2:365446/1‑139 (MQ=255) cGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGGCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt < 8:115148/138‑1 (MQ=255) caaTACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGa < 3:87987/137‑1 (MQ=255) ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt > 4:325812/6‑123 (MQ=255) ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt < 3:325812/118‑1 (MQ=255) ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAac > 4:308863/6‑139 (MQ=255) atctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAAGGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGACCCCAGCAATCGAAACACTCGTTTGATCTTCAGAAAGCTTAac > 6:52802/6‑139 (MQ=255) cTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCaa < 8:94155/139‑1 (MQ=255) tttGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCGAAAg > 5:37913/1‑139 (MQ=255) gAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAg < 8:63393/138‑1 (MQ=255) aaCCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa < 4:421283/139‑1 (MQ=255) aaCCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa < 5:221635/139‑1 (MQ=255) aaCCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa < 2:18040/139‑1 (MQ=255) ccATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAg > 5:58938/1‑139 (MQ=255) ccATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAg > 5:344217/1‑139 (MQ=255) || TGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTGGAACCATTGCACCCGCAATAAGGAAAAACGCCGCTGAAGAAATGTCTCCAGGAACAAAAATATCGGCAGCTGTCAATTTCTGGCCGCCTGTAATAGAAACACTCGTTTGATCTTCAGAAAGCTTAACACCAAAAGCAGAAAG > CP006881/2186254‑2186509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |