| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,187,904 | 3 bp→ATC | coding (322‑324/1116 nt) | U712_10960 ← | Prephenate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,187,904 | 0 | T | A | 100.0% | 282.0 / NA | 90 | R108D (CGA→GAT) | U712_10960 | Prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (44/46); total (44/46) | |||||||||||
| * | CP006881 | 2,187,905 | 0 | C | T | 100.0% | 282.9 / NA | 90 | R108D (CGA→GAT) | U712_10960 | Prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (44/46); total (44/46) | |||||||||||
| * | CP006881 | 2,187,906 | 0 | G | C | 98.9% | 289.3 / NA | 90 | R108D (CGA→GAT) | U712_10960 | Prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base C (42/46); minor base A (1/0); total (44/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCGTTAAAATATAAAATGCATTTTCAAACAGGAATTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCTGCCATCGGATGCCCCCCGACAAATTGGTATCGGCCAGGCAGCACTTGCTCAGCGTATCGAACCACTTTTTGCTTTGTGCTTCCTACATCGGTAATCAAAAGTTGATGTTCAATTCCTGAATGAGCCAGCTCATCAAGCATAAGCATGGTTTGCGCAACAGGTGTGGCAATGATTACTGTGGCTGC > CP006881/2187776‑2188032 ||| ggcGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACtt > 8:297015/1‑139 (MQ=255) gcGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACttt > 1:419858/1‑139 (MQ=255) gcGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACttt < 7:297015/139‑1 (MQ=255) gcGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACttt < 2:183670/139‑1 (MQ=255) gcGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACttt > 7:105590/1‑139 (MQ=255) cGTTAAAATATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACtttt > 3:311792/1‑139 (MQ=255) aaaaTATAAAAAGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCt > 2:265202/1‑139 (MQ=255) aaaTATAAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCt < 4:241956/138‑1 (MQ=255) taAAATGCCTTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg < 8:221263/138‑1 (MQ=255) taAAATGCATTTTCAAACAGGAACTCCTTCGCAGCGTCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg < 8:126585/138‑1 (MQ=255) cATTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTAc < 3:205991/139‑1 (MQ=255) aTTTTCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACa > 3:40126/1‑139 (MQ=255) ttttCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACAt < 4:48194/139‑1 (MQ=255) tttCAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATc > 6:11196/1‑139 (MQ=255) cAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATccg < 8:402034/138‑3 (MQ=255) cAAACAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATccg < 5:14874/138‑3 (MQ=255) cAGGAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATc < 4:311792/139‑1 (MQ=255) gAACTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGACATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCaa > 7:31927/1‑138 (MQ=255) cTTCGCAGCGGCCACTCCTGATTTATGTTAACCCGCCATCGGATCCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTGTTTGCTATGTGCTTCCTACTACCGAAATCAAAAgctca > 4:248454/1‑135 (MQ=255) cTTCGCAGCGGCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAgct < 1:361385/137‑3 (MQ=255) gCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACACATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTc < 1:259361/139‑1 (MQ=255) gCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCaaa < 7:2686/123‑1 (MQ=255) gCCACTCCTGATTTATGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCaaa > 8:2686/1‑123 (MQ=255) ttgtgAACCCGCCATCGGATGCCATCCGACAATTTGATAGCGGCTAGGCAGCACTTGATGAGCGTAATCAACCAGTTTTTGCTTTGTGCTTCCTACATCCGTTATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAg < 1:204922/137‑1 (MQ=255) aTGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAg < 2:176303/138‑1 (MQ=255) aTGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAg < 4:40126/138‑1 (MQ=255) aTGTGAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAg < 8:239858/138‑1 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTc < 7:177986/119‑1 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTc > 8:177986/1‑119 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGc > 8:408078/1‑138 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCt > 7:445073/1‑139 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCt > 3:180037/1‑139 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCt > 6:377443/1‑139 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCt > 2:344272/1‑139 (MQ=255) tgtgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCt > 4:368384/1‑139 (MQ=255) tgAACCCGCCATCGGATGCCCTCCGACAAATTTATAGCGGCTAGGCTGCACTTGATCAGCGTAATGAAACACTTTTTGCGTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCATATCCTGAATGAGCCAGCtct > 5:150840/1‑138 (MQ=255) tgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg > 6:78894/1‑85 (MQ=255) tgAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg < 5:78894/85‑1 (MQ=255) gAACCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCtctt < 8:445073/139‑3 (MQ=255) aaCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCGTGAATGAGCCAg < 6:384754/133‑1 (MQ=255) aaCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCtctt < 2:236594/138‑3 (MQ=255) aaCCCGCCATCGGATGCACTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAg > 5:384754/1‑133 (MQ=255) aCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAgctc < 1:332981/108‑4 (MQ=255) aCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAgctc > 2:332981/1‑105 (MQ=255) aCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCtcttc > 7:68269/1‑138 (MQ=255) aCCCGCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCtcttc > 7:360087/1‑138 (MQ=255) gCCATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagca < 7:430800/139‑1 (MQ=255) ccATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagca > 4:340449/1‑138 (MQ=255) ccATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagca > 6:291034/1‑138 (MQ=255) ccATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagaa > 2:85703/1‑136 (MQ=255) ccATCGGATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATAAACCACTTTTTGCTTTGTGCTTCCTACAACCGTAATCAAAAGATCCTGTTCAATTCCTGAATGAGCCAGCTCTTCaagca > 6:56721/1‑138 (MQ=255) ggATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataacc < 8:31927/138‑3 (MQ=255) ggATGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataacc < 5:90449/138‑3 (MQ=255) aTGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataaccagt < 2:229146/139‑3 (MQ=255) aTGCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataaccagt < 5:377443/139‑3 (MQ=255) gCCCTCCGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATACGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagaataaccagtgt > 4:101259/1‑135 (MQ=255) ccctccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCtagcataaccagtgt < 1:265202/138‑5 (MQ=255) ccctccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataaccagtgtt > 2:166943/1‑134 (MQ=255) ccctccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataaccagtgtt < 8:360087/139‑6 (MQ=255) ccctccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaagcataaccagtgt < 7:408078/138‑5 (MQ=255) tccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgt > 6:419618/2‑138 (MQ=255) cGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACGACTTTTTGCTTTGTGCTTCCTACATACGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgtt < 3:75572/138‑3 (MQ=255) aCAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgttcaa > 7:102544/1‑134 (MQ=255) aCAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgttcaa < 5:11196/139‑6 (MQ=255) cAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc < 4:115761/139‑1 (MQ=255) aTTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAgg > 6:414869/1‑139 (MQ=255) aTTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAgg > 6:198446/1‑139 (MQ=255) ttGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGgt > 4:224357/1‑139 (MQ=255) atagcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaag < 5:355217/107‑1 (MQ=255) atagcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCaag > 6:355217/5‑111 (MQ=255) atagcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGttgtc > 2:442764/5‑138 (MQ=255) agcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGcc < 2:174029/96‑1 (MQ=255) agcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGcc > 1:174029/3‑98 (MQ=255) gcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa < 8:105590/138‑1 (MQ=255) gcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa < 8:69353/138‑1 (MQ=255) ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg > 2:255285/1‑42 (MQ=255) ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTtgtg < 1:255285/42‑1 (MQ=255) ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGAt < 8:149749/137‑1 (MQ=255) ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGAt < 3:224357/137‑1 (MQ=255) caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACtg > 3:51695/1‑137 (MQ=255) caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACta > 3:404156/1‑136 (MQ=255) caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTAATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCATCAGGTGTCGCTATGATTACtgta > 2:77284/1‑138 (MQ=255) caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAACCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTCTTCAACAGGTGTCGCAATGATTACtg > 5:73843/1‑137 (MQ=255) aCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACtgtag < 5:419618/139‑3 (MQ=255) gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTa > 4:256247/3‑129 (MQ=255) gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTa < 3:256247/127‑1 (MQ=255) gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc > 4:21532/3‑139 (MQ=255) gatCAGCGTAATCAACCACTTATTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc < 5:35394/137‑1 (MQ=255) atCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc < 4:51695/137‑1 (MQ=255) atCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc < 3:21532/137‑1 (MQ=255) ||| GGCGTTAAAATATAAAATGCATTTTCAAACAGGAATTCCTTCGCAGCGGCCACTCCTGATTTATGTGAACCTGCCATCGGATGCCCCCCGACAAATTGGTATCGGCCAGGCAGCACTTGCTCAGCGTATCGAACCACTTTTTGCTTTGTGCTTCCTACATCGGTAATCAAAAGTTGATGTTCAATTCCTGAATGAGCCAGCTCATCAAGCATAAGCATGGTTTGCGCAACAGGTGTGGCAATGATTACTGTGGCTGC > CP006881/2187776‑2188032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |