Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,187,993	2 bp→GT	coding (234‑235/1116 nt)	U712_10960 ←	Prephenate dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,187,993	0	T	G	100.0%	218.8 / NA	67	M79L (ATG→CTG)	U712_10960	Prephenate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (39/28);  total (39/28)
*	CP006881	2,187,994	0	G	T	100.0%	222.0 / NA	71	T78T (ACC→ACA)	U712_10960	Prephenate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (40/31);  total (40/31)

CCCGACAAATTGGTATCGGCCAGGCAGCACTTGCTCAGCGTATCGAACCACTTTTTGCTTTGTGCTTCCTACATCGGTAATCAAAAGTTGATGTTCAATTCCTGAATGAGCCAGCTCATCAAGCATAAGCATGGTTTGCGCAACAGGTGTGGCAATGATTACTGTGGCTGCTTTTTTTGCACCGCTAATAAACGAATCAGCACGCTCGTCTATCACACCTAATTTTAATGCGGCTACTACCTGTTCATCAGAGATGTCGAT  >  CP006881/2187862‑2188122                                                                                                                                    ||                                                                                                                                 tccGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgt                                                                                                                            >  6:419618/2‑138 (MQ=255)   cGACAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACGACTTTTTGCTTTGTGCTTCCTACATACGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgtt                                                                                                                           <  3:75572/138‑3 (MQ=255)     aCAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgttcaa                                                                                                                        >  7:102544/1‑134 (MQ=255)     aCAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTgttcaa                                                                                                                        <  5:11196/139‑6 (MQ=255)      cAAATTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc                                                                                                                       <  4:115761/139‑1 (MQ=255)         aTTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAgg                                                                                                                    >  6:414869/1‑139 (MQ=255)         aTTGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAgg                                                                                                                    >  6:198446/1‑139 (MQ=255)          ttGATAGCGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGgt                                                                                                                   >  4:224357/1‑139 (MQ=255)             atagcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGttgtc                                                                                                                >  2:442764/5‑138 (MQ=255)                gcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa                                                                                                             <  8:69353/138‑1 (MQ=255)                gcGGCTAGGCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa                                                                                                             <  8:105590/138‑1 (MQ=255)                       ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGAt                                                                                                        <  3:224357/137‑1 (MQ=255)                       ggCAGCACTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGAt                                                                                                        <  8:149749/137‑1 (MQ=255)                            caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACtg                                                                                                   >  3:51695/1‑137 (MQ=255)                            caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACta                                                                                                   >  3:404156/1‑136 (MQ=255)                            caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTAATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCATCAGGTGTCGCTATGATTACtgta                                                                                                 >  2:77284/1‑138 (MQ=255)                            caCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAACCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTCTTCAACAGGTGTCGCAATGATTACtg                                                                                                   >  5:73843/1‑137 (MQ=255)                             aCTTGATCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACtgtag                                                                                                <  5:419618/139‑3 (MQ=255)                                 gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTa                                                                                                      >  4:256247/3‑129 (MQ=255)                                 gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTa                                                                                                      <  3:256247/127‑1 (MQ=255)                                 gatCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            >  4:21532/3‑139 (MQ=255)                                 gatCAGCGTAATCAACCACTTATTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            <  5:35394/137‑1 (MQ=255)                                  atCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            <  4:51695/137‑1 (MQ=255)                                  atCAGCGTAATCAACCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            <  3:21532/137‑1 (MQ=255)                                         taatcaaCCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa                                                                                                             <  3:59820/109‑1 (MQ=255)                                         taatcaaCCACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCa                                                                                                             >  4:59820/6‑114 (MQ=255)                                                 cACTTTTTGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCt                                                                             >  2:72403/1‑138 (MQ=255)                                                    tttttGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCCCGCATACCCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCtaat                                                                          >  8:30112/1‑138 (MQ=255)                                                      tttGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATaaa                                                                       >  2:56631/1‑139 (MQ=255)                                                       ttGCTTTGTGCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTACTGAATGAGCCAGCTCTTCAAGAATAACCAGTGTTTGTTCAACAGGTGTCGAAATGATTACTTTAGCTGCCTCTTTCACACCGCTAATaaa                                                                       <  1:85703/138‑1 (MQ=255)                                                             tgtgCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCa                                                                >  2:87486/1‑139 (MQ=255)                                                               tgCTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAg                                                               <  4:251910/138‑1 (MQ=255)                                                                 cTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCa                                                             <  1:87486/138‑1 (MQ=255)                                                                 cTTCCTACATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCa                                                             <  8:148402/138‑1 (MQ=255)                                                                        cATCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGt                                                      <  2:257463/138‑1 (MQ=255)                                                                         aTCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            >  7:340308/1‑99 (MQ=255)                                                                         aTCCGTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgctgc                                                                                            <  8:340308/99‑1 (MQ=255)                                                                           ccgTAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCGCACCGCTAATAAACTAATCAGCACGATCGTCTAt                                                  >  5:368440/3‑139 (MQ=255)                                                                           ccgTAATCAAAAGCACATGTTCAATTCCTGAATGAGCCAGCTCTGCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTCCTGAAGATGCCTCTTTCACACCGCTAAAAAACGATGCAGAACGCACGTCtct                                                  >  6:30446/3‑137 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc                                                                                                                       <  6:429333/67‑1 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc                                                                                                                       >  1:187461/1‑67 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc                                                                                                                       >  5:429333/1‑67 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAAc                                                                                                                       <  2:187461/67‑1 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgc                                                                                               <  3:291017/91‑1 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAgc                                                                                               >  4:291017/1‑91 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATcac                                               >  1:231024/1‑139 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATcac                                               >  8:434852/1‑139 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATcac                                               >  1:151645/1‑139 (MQ=255)                                                                              tAATCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATcac                                               >  5:132904/1‑139 (MQ=255)                                                                                aTCAAAAGCTCATGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATcacgc                                             >  1:41200/1‑137 (MQ=255)                                                                                     aagctcaTGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAAt                                        >  8:228725/7‑139 (MQ=255)                                                                                     aagctcaTGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAAt                                        >  8:234891/7‑139 (MQ=255)                                                                                     aagctcaTGTTCAATTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAAt                                        >  5:165699/7‑139 (MQ=255)                                                                                                 aaTTCCTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCTATGATTAGAGTAGCTGCCTCTTTCACACCTCTAATAAACGATTCAGCACGATAGTCTATCACGCCTAATTTTAATGCCGct                            <  8:387100/139‑1 (MQ=255)                                                                                                   ttCCTGAATGAGCCAGCTCTTCAAGCATAGCCAGTGATTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGATTCAGCACGATCGTCTATCACGCCTAATTTTATTGCCGatac                          >  6:56034/1‑139 (MQ=255)                                                                                                     ccTGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGctacc                         <  8:68269/138‑2 (MQ=255)                                                                                                       tGAATGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGctaccgcc                      >  3:76958/1‑135 (MQ=255)                                                                                                         aaTGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTg                    <  3:340449/139‑1 (MQ=255)                                                                                                          aTGAGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTg                    <  5:198446/138‑1 (MQ=255)                                                                                                             aGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCTCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCAGCTACCGCCTGTtct                >  7:120220/1‑138 (MQ=255)                                                                                                             aGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCGTGTtca                >  6:92610/1‑139 (MQ=255)                                                                                                             aGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTtc                 >  3:356185/1‑138 (MQ=255)                                                                                                             aGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCAGCTACCGCCTGTtc                 >  3:436173/1‑138 (MQ=255)                                                                                                             aGCCAGCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCCCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTtca                >  1:362833/1‑139 (MQ=255)                                                                                                                  gCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTTCATCaga           <  1:344272/139‑1 (MQ=255)                                                                                                                  gCTCTTCAAGCATAACCAGTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTTCATCaga           <  2:231024/139‑1 (MQ=255)                                                                                                                        caAGCATAACCAGTGTTTGTTCAACAGGTCTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACTAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTTCATCAGAGATGTc     >  5:328561/1‑139 (MQ=255)                                                                                                                          agcataaccagTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTTCATCAGAGATGTCGa   <  6:165699/139‑1 (MQ=255)                                                                                                                           gcataaccagTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCTAATTTTAATGCCGCTACCGCCTGTTCATCAGAGATGTCGAt  <  4:180037/139‑1 (MQ=255)                                                                                                                            cataaccagTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCt                                           <  6:248493/97‑1 (MQ=255)                                                                                                                            cataaccagTGTTTGTTCAACAGGTGTCGCAATGATTACTGTAGCTGCCTCTTTCACACCGCTAATAAACGAATCAGCACGATCGTCTATCACGCCt                                           >  5:248493/1‑97 (MQ=255)                                                                                                                                    ||                                                                                                                                 CCCGACAAATTGGTATCGGCCAGGCAGCACTTGCTCAGCGTATCGAACCACTTTTTGCTTTGTGCTTCCTACATCGGTAATCAAAAGTTGATGTTCAATTCCTGAATGAGCCAGCTCATCAAGCATAAGCATGGTTTGCGCAACAGGTGTGGCAATGATTACTGTGGCTGCTTTTTTTGCACCGCTAATAAACGAATCAGCACGCTCGTCTATCACACCTAATTTTAATGCGGCTACTACCTGTTCATCAGAGATGTCGAT  >  CP006881/2187862‑2188122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑