| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 2,214 | C→T | 100% | intergenic (–/‑764) | – / → eryR | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 2,214 | 0 | C | T | 99.4% | 40478.4 / 74.6 | 11839 | intergenic (–/‑764) | –/eryR | –/– |
| Reads supporting (aligned to +/- strand): ref base C (29/41); new base T (4720/7014); total (4775/7064) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 11843 total aligned reads displayed.
AATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTCGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGGATTATGAATTA > pSIJ663_pHT315_araE_xy/2077‑2349 | aTCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCTAGTTATATGTATCTATTATGATTTGTGGTAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGt < 5:12522/139‑1 (MQ=255) aTCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTAGTATC‑TTTTTTTTATTAGCAGTCAATTTTCTGCATCATCTTGt > 6:215095/1‑139 (MQ=255) aTCCGGGAAACATTTTTACATCGATAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGGTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGt < 7:307180/139‑1 (MQ=255) aTCCGGGAAACATTTTTACATAGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGt < 7:209916/139‑1 (MQ=255) ggAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCtt > 3:303545/1‑139 (MQ=255) ggAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCtt > 3:36819/1‑139 (MQ=255) ggAAACATTTTTACATCGTTAGAAGTGCAAGTAAATTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGTTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCATCATCTTGTATCtt > 1:6097/1‑139 (MQ=255) ggAAACATTTTTACATCGTTAGAAGTGAAAGTCAAGTTATAAGTATCTATAATGATTAGTGGAAGTTATGCCACACCAGATGGTTTATTTACAATC‑TTTTTTTAATTAGCCGTCAAATTTATCCCTAATATTGACTCtt > 4:267227/1‑139 (MQ=255) aaaCATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTGTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTta < 4:76202/139‑1 (MQ=255) aTTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATc > 8:46739/1‑139 (MQ=255) tCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCtttatttta < 8:214540/139‑1 (MQ=255) tCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCtttatttta < 3:115582/139‑1 (MQ=255) tCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCtttatttta < 2:280059/139‑1 (MQ=255) cGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCtttatttta > 1:219521/1‑138 (MQ=255) ttAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATGTTGTCTGTTTATATCtttattttatga > 1:119487/1‑137 (MQ=255) gTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg < 6:163381/139‑1 (MQ=255) gTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg < 8:241611/139‑1 (MQ=255) caagtcaagtTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAg > 3:144696/1‑138 (MQ=255) caagtcaagtTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAg < 4:345096/138‑1 (MQ=255) caagtcaagtTATATGTATCTATAATAATTTGTGGAAGTTTTGACACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTATCCCTCATCTTGTCTCATTATATCTTTATTTAATAATATATGAg > 6:317939/1‑138 (MQ=255) gtTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg < 4:52818/128‑1 (MQ=255) atatGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTAATCATGTCTCTTTATATCTTTATTTTATCATAAAGGATTATTTTaaact > 2:328468/1‑135 (MQ=255) tGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTcgc > 6:341390/1‑139 (MQ=255) tATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTcgcg < 7:285377/138‑1 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTTTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCgg > 4:135758/1‑139 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGt > 5:305881/1‑89 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGt < 4:194083/89‑1 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg > 5:89251/1‑118 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTTATCCGTCGCGCgg > 2:153265/1‑139 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTcgcg > 6:110988/1‑136 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCgg > 6:239919/1‑139 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCgg > 1:299678/1‑139 (MQ=255) tCTATAATGATTTGTGGAAGTTTTGAAAAAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCTTCAAATTTCTCCCTCATCTTGTATCTTTATATATTTATTTTATCATAACTTATTATTTGAACCTTATCGCgg > 5:10173/1‑139 (MQ=255) cTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCggg > 5:280079/1‑139 (MQ=255) cTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCgg > 3:60725/1‑138 (MQ=255) tataATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 2:65634/139‑1 (MQ=255) tataATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 6:50724/139‑1 (MQ=255) taATTATTTGTTGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATATTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 5:333288/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAAGAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATGTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 1:89652/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 7:233338/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 5:221485/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 5:172424/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 5:147535/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 1:164232/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 7:106278/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 2:225312/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 7:128930/137‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 8:1656/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 8:115522/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 7:41542/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 2:41352/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 3:230422/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGAc < 2:305390/138‑1 (MQ=255) taATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGACTCTTTATATCTTTATTTTATCATAAAGGTGTATTTGAGCCGTCGCGCGGGa > 7:153932/1‑137 (MQ=255) taATGATTTGTGGAAGTGTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 7:68153/137‑1 (MQ=255) aTGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa < 1:325632/135‑1 (MQ=255) aTTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGtt < 5:198799/138‑1 (MQ=255) tttGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATCTTTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTta > 8:74595/1‑87 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg < 8:316146/106‑1 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAgg > 7:184515/1‑106 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGTGACAGGTTTAt < 2:110037/138‑1 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa > 5:65126/1‑129 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTAt > 7:90929/1‑138 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATg > 5:38666/1‑139 (MQ=255) tgtgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑‑TTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa > 1:36535/1‑128 (MQ=255) tgGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGa > 7:259088/1‑138 (MQ=255) gTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGa > 6:289973/1‑139 (MQ=255) ttttGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCtttattt < 3:276075/87‑1 (MQ=255) gCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATTGGGATAttt > 2:92090/1‑139 (MQ=255) cacaACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTa < 5:252967/139‑1 (MQ=255) cacaACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTa < 8:292501/139‑1 (MQ=255) acaGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGata > 6:266376/1‑130 (MQ=255) caGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTATTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGaa < 2:175410/139‑1 (MQ=255) ttGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGa > 3:253753/1‑107 (MQ=255) tttatttaTATTC‑TTTTTTTTTTTAGACGTGAAATTTCTCCCTCATCTTGTCTCTTTATATATTTATTTTATCATAAAGGAGTATTTGAACCGGCGCGCGGGAAAGGTTTATGATAGGGATTTTTTATTGAATAATTGa < 8:338757/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 1:274650/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 1:244004/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 8:191181/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 3:328451/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 2:130544/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 3:87031/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 3:201919/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 4:245494/139‑1 (MQ=255) tttatttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 2:253224/139‑1 (MQ=255) tgtatttaCCATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTAGTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGa < 6:13602/137‑1 (MQ=255) atttaCAATC‑TTTTTTTTATTAGCCTTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATgg > 6:190854/1‑139 (MQ=255) atttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATg < 8:267029/138‑1 (MQ=255) tttaCAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTcgcg < 3:173852/94‑1 (MQ=255) aaTC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAg > 2:205200/1‑139 (MQ=255) tttttttATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATAATAAAGGAGTATTTTAACCGTCTCGCGGGACAGGTTTATGATAGGGATATTTTATTTAATAATTGATGGTATAATGGACt > 1:100250/1‑139 (MQ=255) ttttttATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGAt < 4:22136/100‑1 (MQ=255) ttttttATTAGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAggg < 4:110004/135‑1 (MQ=255) ttattaGCCGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCa < 1:189892/138‑1 (MQ=255) cGTCAAATTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGaa < 4:166517/139‑1 (MQ=255) aTTTCTCCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTggg < 4:320082/139‑1 (MQ=255) ctcCCTGATATTGTATCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGGAt < 8:13961/138‑1 (MQ=255) ctcCCTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGGAt < 1:139756/138‑1 (MQ=255) ccTCATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTTTTTGAACCGTCGCGCGGGACAGGTTTATGATAGTGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGGATTATg < 7:332044/139‑1 (MQ=255) ccTCAGCTTGTCTCTTTATATCTTTATTTTATCATAAAGGAGTTTGTCACCCGTCGCGCGGGACAGGTATATGATAGGGATATTTTATTGAAAAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGTAtt < 6:77464/136‑1 (MQ=255) ccTAATCTTGTCTCTTTATATCTTTATTTTATCATAAAGGTGTCTTTGAACCGTCGCGCGGGACAGTTTTATGATAGTGATATTTTATTGAATAATTGATTGTATAAGGGACTTTCATGCTTGGAAAGTGGGGATTAt < 4:291604/138‑1 (MQ=255) | AATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACAATC‑TTTTTTTTATTAGCCGTCAAATTTCTCCCTCATCTCGTCTCTTTATATCTTTATTTTATCATAAAGGAGTATTTGAACCGTCGCGCGGGACAGGTTTATGATAGGGATATTTTATTGAATAATTGATGGTATAAGGGACTTTCATGCTTGGAAAGTGGGGATTATGAATTA > pSIJ663_pHT315_araE_xy/2077‑2349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |