| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 2,232,718 | T→C | 7.0% | D121G (GAT→GGT) | U712_11215 ← | RNA polymerase sigma factor sigX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,232,718 | 0 | T | C | 7.0% | 202.8 / 4.5 | 71 | D121G (GAT→GGT) | U712_11215 | RNA polymerase sigma factor sigX |
| Reads supporting (aligned to +/- strand): ref base T (28/38); new base C (3/2); total (31/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCTCCATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACGCTGTCTGA > CP006881/2232580‑2232853 | aGCTCCATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt < 6:246051/139‑1 (MQ=255)aGCTCCATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt < 8:106091/139‑1 (MQ=255)aGCTCCATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCATGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt < 7:59992/139‑1 (MQ=255) cATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGa < 7:6123/137‑1 (MQ=255) tatGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTAATTTGCTTTCCGAGAAGCGCAGAGCCTTGGCGGTTTCCTGTTTTGAATATCCCTGAATAAACCGCAAGATAATCACACCGCTTTGATCGATTGt > 7:36971/1‑139 (MQ=255) tCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTGCGAGAAGCGCAGCGCCTTGGGTGTTTGCTGTATTTAATATCCCAGAATAAACCGCAAGATAATCACAGCTATTTGATCGATTGTACATTg > 5:124664/1‑139 (MQ=255) ggTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCGTGGCTGTTTGCGGTATTGAATATACCTGAATAAACCGCAAGATAATCACACCTCTTTGTTCGGTTGTACATTGATAAAGCGCAGCCTAAATTTCCCGGACa > 6:345555/1‑139 (MQ=255) tGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAAc > 2:106593/1‑139 (MQ=255) cTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt > 8:149959/1‑82 (MQ=255) cTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt < 7:149959/82‑1 (MQ=255) cgcAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCg > 3:215307/1‑139 (MQ=255) cgcAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCg < 6:156253/139‑1 (MQ=255) tGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt > 6:203389/1‑60 (MQ=255) tGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGAt < 5:203389/60‑1 (MQ=255) tGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAgcg < 4:142837/81‑1 (MQ=255) tGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAgcg > 3:142837/1‑81 (MQ=255) tGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTg > 5:161436/1‑139 (MQ=255) gCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCt < 6:27477/139‑1 (MQ=255) gTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt > 6:147541/1‑139 (MQ=255) tttCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt < 5:347292/138‑1 (MQ=255) tttCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt < 3:8418/138‑1 (MQ=255) tttCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt < 3:84824/138‑1 (MQ=255) ttCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATcc > 1:208436/1‑139 (MQ=255) cTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCt < 5:345555/138‑1 (MQ=255) cTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCt < 5:147541/138‑1 (MQ=255) tATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACa > 1:97467/1‑139 (MQ=255) tATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACa < 4:215307/139‑1 (MQ=255) ttGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATc < 6:124664/139‑1 (MQ=255) ttGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATc < 4:136949/139‑1 (MQ=255) ttGAAGATCACTGAATAAACCGCAAGATAATCACAGCTCTTAGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCTTCCGGCAGCAATTGCTGATCCCTGACATc < 2:186127/139‑1 (MQ=255) aaTATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGa < 6:13433/81‑1 (MQ=255) aaTATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGa > 5:13433/1‑81 (MQ=255) aaTATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCtg > 7:34119/1‑139 (MQ=255) aaTATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGATGATCCCTGACATCCtg > 6:33203/1‑139 (MQ=255) tatCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCtgtg > 7:82692/1‑139 (MQ=255) tatCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGACCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCtgtg > 2:101074/1‑139 (MQ=255) tatCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGACCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCtgtg > 2:106134/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATc > 7:287773/1‑131 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATc < 8:287773/131‑1 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTAt > 1:67015/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTAt > 8:157372/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTAt > 1:214286/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTAt > 3:336485/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTACGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTAt > 2:20747/1‑139 (MQ=255) cccTGAATAAACCGCAAGATAATCACAGCTCTTTGACCTATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGCCATCCTGTGTAt > 1:155821/1‑139 (MQ=255) aaTAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt < 6:342886/116‑1 (MQ=255) aaTAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGAt > 5:342886/1‑116 (MQ=255) aaTAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCa < 6:67115/138‑1 (MQ=255) aaTAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAg > 6:329378/1‑139 (MQ=255) aTAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGt < 1:106593/139‑1 (MQ=255) aTAAAAAGCAATATAATCACTGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCGCGGACATATTCATGTTGAACCGAAAGGTCGTCCTGCAGCATTTGCTGATCCCTGACATCCTGTGTATCCCAGt < 5:205401/139‑1 (MQ=255) tAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTc < 7:157372/139‑1 (MQ=255) aaCCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCaa < 2:214286/139‑1 (MQ=255) aCCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCaaa > 6:298066/1‑139 (MQ=255) aCCGCAAGATAATCACAGCTCTATGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCaaa < 2:199067/139‑1 (MQ=255) aCCCCAAGATAATCACAGCTCTTTGATCGATAGTACATTCATCAAGCGCAGCATAAATATCACGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTCCTGATCCCTGACATCCTGACTATCCCAGTCaaa > 2:219348/1‑139 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCaa > 2:151642/1‑133 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCaa < 1:151642/133‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 8:36971/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 8:82692/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 5:329378/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 1:319571/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 6:161436/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTACGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 1:20747/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGACCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 1:106134/139‑1 (MQ=255) aaGATAATCACAGCTCTTTGACCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 1:101074/139‑1 (MQ=255) aGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAcc < 5:298066/139‑1 (MQ=255) aGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAcc < 8:34119/139‑1 (MQ=255) caGCTCTTTTATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 1:10300/139‑1 (MQ=255) caGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 5:318422/139‑1 (MQ=255) caGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 5:130183/139‑1 (MQ=255) caGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 1:20878/139‑1 (MQ=255) caGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 1:199454/139‑1 (MQ=255) caGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACg < 1:194637/139‑1 (MQ=255) tttGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc < 4:97980/123‑1 (MQ=255) tttGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTAc > 3:97980/1‑123 (MQ=255) tGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGCACCGCAAGTTCGTCCGCCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTCCCGAGAATACGCTGTCTGa > 2:188740/1‑139 (MQ=255) tGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACGCTGTCTGa > 2:289288/1‑139 (MQ=255) | AGCTCCATATGTTTCCGAAGTACTTTGAGCCCTCTGTGTTGGGTCGTTTTTACTTTGCTTTCCGAGAAGCGCAGAGCCTTGGCTGTTTCCTGTATTGAATATCCCTGAATAAACCGCAAGATAATCACAGCTCTTTGATCGATTGTACATTGATCAAGCGCAGCATAAATTTCCCGGACATTTTCATGTTGAACCGCAAGTTCGTCCGGCAGCAATTGCTGATCCCTGACATCCTGTGTATCCCAGTCAAATGTACCGAGTATACGCTGTCTGA > CP006881/2232580‑2232853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |