| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 43.8% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | = 1662120 | 41 (0.660) | 30 (0.530) | 24/208 | NT | 43.8% | coding (805/1464 nt) | U712_08545 | putative flagellar hook‑length control protein |
| ? | CP006881 | 1662132 = | 40 (0.710) | coding (817/1464 nt) | U712_08545 | putative flagellar hook‑length control protein | |||||
AGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661980‑1662120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGGAC > CP006881/1662132‑1662267 AGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAG < 7:330074/139‑1 GCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGC < 5:63448/139‑1 GCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGC < 3:201519/139‑1 CAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCTAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGC > 5:255696/1‑138 CAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC > 2:401892/1‑139 CAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGATGAAAGC > 5:15535/1‑138 TTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTG < 8:61810/139‑1 TAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATC > 1:98350/1‑139 AGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGA > 5:73114/1‑138 GCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAA < 6:73114/139‑1 TCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCC > 4:258155/1‑139 ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACA < 2:98350/139‑1 GATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGG > 5:247273/1‑139 GATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTT < 6:155273/137‑1 AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAG < 3:258155/139‑1 AGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCT < 7:288985/139‑1 AGAGATTAAAAGTTTTCAAATCTTAATGGATCATATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGTATGCATTCTTGTTATCGAACTCATCCGAATCATCACAAGACTTTGGGAAGAGTGTACT < 3:270634/139‑1 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGCCTTTGGGAAGCGTGTTCTCACACCG > 2:66890/1‑139 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACAC < 8:351197/137‑1 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTGCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCG > 5:118856/1‑139 CAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAA > 3:380459/1‑138 AAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACAC > 6:128141/1‑112 AAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACAC < 5:128141/112‑1 TATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATC > 2:347130/1‑139 TATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAG > 7:217454/1‑127 TATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAG < 8:217454/127‑1 CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 6:247273/139‑1 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTT > 4:243129/1‑139 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTT > 1:57746/1‑139 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCG > 2:240940/1‑106 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCG < 1:240940/106‑1 AAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGG < 1:197172/139‑1 GACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTAT < 2:362831/139‑1 ACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCCCACCTCTCTCGCAGATTTCATCCAGCAAAAATGCATCGGAGGTTTCTGGAAGTAT > 1:141611/1‑138 AAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGC < 3:27487/139‑1 AAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGC > 1:254370/1‑139 AGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGAT < 4:380459/139‑1 TTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAATAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAG > 7:308692/1‑139 TAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGT > 2:354194/1‑138 GCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAA > 2:158412/1‑139 GCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGGAC < 2:254370/139‑1 AGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661980‑1662120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGGAC > CP006881/1662132‑1662267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |