| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 860,775 | G→A | 5.8% | A52T (GCA→ACA) ‡ | U712_04170 → | Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 860,775 | 0 | G | A | 5.8% | 338.5 / 4.9 | 102 | A52T (GCA→ACA) ‡ | U712_04170 | Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base G (34/62); new base A (3/3); total (37/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
AATTGGCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGCAATGCAG > CP006881/860639‑860910 | aaTTGGCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGc < 4:103428/138‑1 (MQ=255)aaTTGGCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGc < 4:143036/138‑1 (MQ=255) gCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCATAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGa < 3:80592/138‑1 (MQ=255) gCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGa < 2:230231/138‑1 (MQ=255) aTTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGaa < 8:208033/139‑1 (MQ=255) aCTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACt < 8:226754/138‑1 (MQ=255) agagTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCAT‑AAAGCGATTGAACTGATTGGCg < 4:372108/138‑1 (MQ=255) gagTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCgg < 4:232329/139‑1 (MQ=255) agTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGa < 6:230381/139‑1 (MQ=255) gTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAg < 5:374057/139‑1 (MQ=255) ttattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCACGCTTTATGGCGTATGTCATCGCAGCGATTGAAGTGATTGGCTGAGt > 8:237539/1‑139 (MQ=255) ttattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGTGGAGt > 6:180151/1‑139 (MQ=255) ttattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGt > 5:188740/1‑139 (MQ=255) ttattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGt > 8:319345/1‑139 (MQ=255) ttattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGt > 1:113445/1‑139 (MQ=255) tattaCAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATACAATTTTTCGGCTGCATAGGCCTTCCAAGCTTTATGGCGTATTTCATCGCAGCGATTGAACTGATTGGCGGAGTg > 5:309104/1‑139 (MQ=255) cAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGt < 8:183919/139‑1 (MQ=255) ttatCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTcttctt > 5:3893/1‑139 (MQ=255) ttatCTTTTTTGTTAACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAAAAATTCGGCACCAAACGACTTCCAACCGTTATCGCGTTTGTCCTCACAGCGATTGAACTGATTGGCTGAGTGCTTGtgttcta > 8:130756/1‑138 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGa < 5:388652/136‑1 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGa < 5:118599/136‑1 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGa < 4:129097/136‑1 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTg > 4:42563/1‑139 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCAT‑AAAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTgg > 8:263732/1‑139 (MQ=255) ttttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCAT‑AAAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTgg > 2:283134/1‑139 (MQ=255) tttGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTgg > 1:225765/1‑139 (MQ=255) tGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGc < 8:296391/138‑1 (MQ=255) tGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGc < 4:225571/138‑1 (MQ=255) ttCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa < 3:391379/138‑1 (MQ=255) ttCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa < 6:176154/138‑1 (MQ=255) ttCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa < 3:311212/138‑1 (MQ=255) ttCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa < 5:197108/138‑1 (MQ=255) gTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATATGCCTTCCCAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGTTTGGCTACACGTAt < 8:16287/139‑1 (MQ=255) gTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt < 4:198053/139‑1 (MQ=255) gTTTATCAAAGGTTCAGCGAATGGAGGGAACCATACAATTTTTAGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGGCATCGCAGCGATTGAACTGATTTGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGttt < 8:155300/139‑3 (MQ=255) tttATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGTGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAtt < 5:180151/139‑1 (MQ=255) tATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTg < 7:237539/138‑1 (MQ=255) tCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCg < 7:238275/139‑1 (MQ=255) aaGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCATCATAGGCCTTCCAAGCTTTATGACGTATGTCATCGCAGCGATTGAACTGATTGGATGAGTGCTAGTCTTCTTCGGATTGTCTACACGTATTGTCGgtg > 8:216730/1‑139 (MQ=255) tCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTg > 7:201337/1‑139 (MQ=255) aGGGAATGGAGTGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 1:307010/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCCTCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 4:312766/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 5:295952/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 2:113445/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 2:311297/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 3:50444/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 2:225765/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 6:22749/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 6:3893/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 7:55377/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 3:42563/139‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCAT‑AAAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 1:283134/138‑1 (MQ=255) aGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCAT‑AAAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 7:263732/138‑1 (MQ=255) tGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt < 6:46316/118‑1 (MQ=255) tGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt > 5:46316/1‑118 (MQ=255) tGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGctct > 6:292502/1‑139 (MQ=255) gggCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGc > 2:229113/1‑60 (MQ=255) gggCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGc < 1:229113/60‑1 (MQ=255) aCCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 4:392048/125‑1 (MQ=255) aCCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 3:392048/1‑125 (MQ=255) aCCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGa > 6:304774/1‑139 (MQ=255) ccagcgaaTTTTTCGGCAGCATAGGCCTTCCAAGATGTCTGGCGTATGTCATCGCAGCGCTTGAACTGATTGGGGGAGTGCTTGTCTTCTTCGGATTGGCAACACGTTTTGGCGGTGTTCTGTTCGCTCTTACACTGAt < 7:130756/133‑1 (MQ=255) ccATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGAt < 6:188740/139‑1 (MQ=255) ccATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGAt < 2:43834/139‑1 (MQ=255) aTCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCg > 4:71574/1‑139 (MQ=255) tCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 6:88547/1‑121 (MQ=255) tCCAATTTTTCGGCAGCATAGGCCGTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 5:88547/121‑1 (MQ=255) tttttCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCca > 7:129770/1‑139 (MQ=255) cGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt > 5:10906/1‑96 (MQ=255) cGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt < 6:10906/96‑1 (MQ=255) cGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCcatcat < 1:44712/138‑1 (MQ=255) cGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCcatcat < 5:195848/138‑1 (MQ=255) cGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCcatcat < 8:201337/138‑1 (MQ=255) gCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 8:221632/1‑100 (MQ=255) gCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 7:221632/100‑1 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGAt < 3:336785/67‑1 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGAt > 4:336785/1‑67 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt > 6:350716/1‑80 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTAt < 5:350716/80‑1 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 3:66451/95‑1 (MQ=255) ccAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 4:66451/1‑95 (MQ=255) aGCTTTTTGGCGTATGTCATCGCAGCGATTGAACTGAATGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAgcgc < 2:204131/139‑1 (MQ=255) aGCTTTTTGGCGTATGTCATCGCAGCGACTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAgcgc < 6:309104/139‑1 (MQ=255) aGCTTTATGGCGGATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCGTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAgcgc < 3:358460/139‑1 (MQ=255) ttATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCAtt > 4:34406/1‑139 (MQ=255) ttATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCAtt > 4:189532/1‑139 (MQ=255) tATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTg > 4:400913/1‑74 (MQ=255) tATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTg < 3:400913/74‑1 (MQ=255) tATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 8:337698/87‑1 (MQ=255) tATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 7:337698/1‑87 (MQ=255) aTGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTc < 3:189532/138‑1 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa < 6:8044/58‑1 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTa > 5:8044/1‑58 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 6:47473/80‑1 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt < 6:210389/80‑1 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGtt > 5:47473/1‑80 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGc > 6:333909/1‑138 (MQ=255) tATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGATTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGc > 1:222047/1‑138 (MQ=255) aTGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGCaa > 5:117157/1‑139 (MQ=255) aTCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGCAATGCAg < 3:14975/139‑1 (MQ=255) | AATTGGCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGATTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGCAATGCAG > CP006881/860639‑860910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |