| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.6% | intergenic (+571/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 5,302 | 0 | A | C | 5.6% | 27283.4 / 271.7 | 10298 | intergenic (+571/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base A (5502/3955); new base C (36/754); total (5547/4751) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 10642 total aligned reads displayed.
CTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAC > pSIJ663_pHT315_araE_xy/5164‑5440 | gccTCAAGACGATAGTAACCGGATAAGGCGCAGCGGGCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTGGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTc < 3:215467/137‑1 (MQ=255) cTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTCACCCGCACTGAGATACCTAAAGCGTGAGCTATGAGAAAGCGCCACGCTTccc > 5:82416/1‑139 (MQ=255) cAAGACGATAGTTACCGGATACGGCGCCGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 1:397248/139‑1 (MQ=255) cAAGACGATAGTTACCGGATACGGCGCAGCGGGCGGGCGGAACGGGGGGTGCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 5:128978/139‑1 (MQ=255) aaGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGCCCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCg > 6:254906/1‑137 (MQ=255) aaGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCg > 6:374956/1‑137 (MQ=255) aaGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 8:50268/138‑1 (MQ=255) aTAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAgcg < 7:272549/119‑1 (MQ=255) tAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGgaga > 3:259494/1‑138 (MQ=255) tAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCGTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa < 3:322527/139‑1 (MQ=255) tAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGGTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa < 8:244764/139‑1 (MQ=255) aGTTCCCGGATACGGCGCAGCGGTCGGGCTGAACGGGGGGTGCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATCCCTACCGCGGGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa < 3:369206/138‑1 (MQ=255) aGTTACCGGATATGGCGCTGCGGGCGGGCGGAACGGGGGGTTCGGGCAAACAGCCCAGTTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGTGAAAGCGCCACGCTTCCCGAAGGGAGaa < 8:352423/138‑1 (MQ=255) aCCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCg > 3:292846/1‑139 (MQ=255) ccGGATCAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCTGCTTGGAGCGACCGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCg < 3:122546/138‑1 (MQ=255) cGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGGTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGa < 7:64482/139‑1 (MQ=255) ggCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGCCCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTAt > 6:177822/1‑139 (MQ=255) ggCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTAt > 1:319678/1‑139 (MQ=255) ggCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCGTGGAGCGACCGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTAt > 1:227425/1‑139 (MQ=255) aGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 3:62286/112‑1 (MQ=255) aGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCgg > 6:93007/1‑138 (MQ=255) gggCTGAAGGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACGGATATCCCTACCGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGc < 8:382863/139‑1 (MQ=255) gggCTGAACGGGGGGGCCGTGCACACAGCCCAGCTTGGACCGAACCACCTACACCTAACTGATATACCAACAGGGTGAGATATGATAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGc < 8:221349/139‑1 (MQ=255) cggAACGGGGGGTTCGTGCACACAGCCCTGCTGGGAGCGAACGACATACACCCAACTTAGATACCTACAGCGTGAGCTATGAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAgg < 7:253266/137‑1 (MQ=255) gacgggggggTGCGTGCACACCCCCCCGCTGGGACCGAACGACCAACACCGAACTGCGAACCCAACAGCGTGAGCTATGACAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 7:374116/135‑1 (MQ=255) gaccGGGGGGTGCGTCCACACACCCCAGCTGGGAGCAAACCACCTACCCCGAACTCATAACCCAACCGGGTCAGCTATTAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 4:67700/136‑1 (MQ=255) gAAGGGGGGGTGCGTGACCACAGCACCTGTTGGACCGAACTCCATACAACGATCTCATATACCACCCGCGTGAGCTTTGATAAAGCGCCACGCTTCCCGATGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 6:135989/139‑1 (MQ=255) accGGGGGGCTCGGGCACACAGCCATGCTGGGAGCGAACGACCTACACCCAACTGCTAAACCTACAGCTGGAGTTATGATAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 5:307116/136‑1 (MQ=255) aaCGGGGGGTTCGTGCACACAGCCCAGCTGGGAGCGAACGACCAACACCGAACTGCGATCCCTACAGCGTGAGCTATGAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAgggg < 6:102761/138‑2 (MQ=255) aaCGGGGGGTTCGTGCAAACAGCCCAGCTTGGCGCGAAAGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 3:187573/138‑1 (MQ=255) aaCGGGGGGTTCGGGCACACAGCCCAGCTTGGAGCGAACGACCTACCCCGAACTGAGATACCTACCGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACTGGTATCCGGTAAGCGGCAGGGt < 1:205845/138‑1 (MQ=255) ggggTTCGTGCACACAGCCCAGCTTGGAGCGCACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGATAGGCGGACAGGTATCCGGTAGGCGGCAGGGTCGGAAc > 5:385591/1‑139 (MQ=255) gggTTCGTGCACACAGCCCAGCTTTGAGCGAACGACCTAAACCTAACTGAGAAACCTACAGCGTTAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACa < 8:113337/139‑1 (MQ=255) gggTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 5:277969/93‑1 (MQ=255) gggTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGaa > 2:14814/1‑137 (MQ=255) ttCGGGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGACATACCTCCCGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga < 1:35605/139‑1 (MQ=255) tCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGgag > 8:172972/1‑139 (MQ=255) cGTGCACACAGCCCCGGTTGCCGCGAACGACCTCCACCGACCTGAGAAACCTCACGCGTGACCTATGAGAACGCGCCACGCTTCCCGACGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGgaga < 5:335152/139‑1 (MQ=255) tGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAgc > 4:308054/1‑139 (MQ=255) gCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGa < 1:287556/78‑1 (MQ=255) cccAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAggg > 1:165617/1‑139 (MQ=255) cccAGCTGGGAGCGAACGACCTACACCGACCTGAGATCCCTACCGCGTGCGCTATGAGAAAGCGCCACGCTTCCCGACGGGAGAAAGGCGGACAGGTAGCCGGTAAGCGGCAGGGGCGGAACAGGAGAGCGCACGAggg < 5:199679/139‑1 (MQ=255) cacaccTTGGAGCGAACGACCTACACCGAAATTAGATAACTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAgg > 2:66574/6‑138 (MQ=255) aGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGc < 8:199198/67‑1 (MQ=255) ggAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTc > 3:167012/1‑137 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGTGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 3:94625/106‑1 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCg < 2:114762/80‑1 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAgg > 2:91124/1‑128 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 8:294620/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 7:295295/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 5:235428/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGCGAGCTTCCAgg > 2:19441/1‑139 (MQ=255) aaCGACCTACACCTAACTTATAACCCTCACGCGTGAGCTATGAGAAACCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGa < 2:42765/139‑1 (MQ=255) aCGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGa < 1:128513/77‑1 (MQ=255) aCGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGa > 8:75939/1‑138 (MQ=255) acacCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAACCGCCTg > 3:146959/1‑139 (MQ=255) cacccaccTGCGAAACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTgg < 1:85216/139‑1 (MQ=255) acCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGGGCCACGCTTCCCTAAGGGAGAAAGGCGGACATGTATCCGGTAAGCGGCAGGGGCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGt < 7:43151/139‑1 (MQ=255) acCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGt < 7:229230/139‑1 (MQ=255) acCGAACTCCGAAACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGt < 5:176081/139‑1 (MQ=255) cGAACTGAGATACCTACAGCGTGAGCTATGAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTAt < 4:99466/139‑1 (MQ=255) cGAACTGACATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTAt < 5:153480/139‑1 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCCCGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCt > 4:174765/1‑139 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGa < 7:117351/64‑1 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCt > 7:90192/1‑139 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCt > 7:319366/1‑139 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCt > 4:24225/1‑139 (MQ=255) aaCTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTAGCt > 8:26988/1‑139 (MQ=255) tGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTta < 8:134178/139‑1 (MQ=255) agaTACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGCGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATcctgtct > 5:52238/1‑133 (MQ=255) agaTACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTtata < 6:157613/139‑1 (MQ=255) agaTACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTta > 6:293668/1‑137 (MQ=255) caTACCAACAGCGTGACTAATGAGAATGCCCCCGGCTTCCCGTAGCGAGAAAGGCTGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTtata < 1:10001/137‑1 (MQ=255) ccTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 7:18101/78‑1 (MQ=255) aGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGATAGGCGGACAGGTATCCGGTACGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAACCGCCTGGTATCTTGATAGTCCTGTCgg > 2:285575/1‑139 (MQ=255) aGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga > 7:207651/1‑83 (MQ=255) aGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCgg > 7:141876/1‑139 (MQ=255) cgggAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGt < 4:343239/136‑1 (MQ=255) cGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGt > 2:25504/1‑139 (MQ=255) cGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGt > 3:348317/1‑139 (MQ=255) tGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGt < 1:610/57‑1 (MQ=255) tGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGaa > 4:150945/1‑74 (MQ=255) tGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga < 6:323612/79‑1 (MQ=255) tGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGttt > 5:362737/1‑139 (MQ=255) tGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGttt > 3:392416/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa > 2:317066/1‑36 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt > 2:35956/1‑67 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTAt > 4:393354/1‑116 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 4:126114/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 6:39817/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 8:321698/1‑139 (MQ=255) gCTATGCTAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGc < 4:277412/139‑1 (MQ=255) gagaAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCgg < 1:253354/64‑1 (MQ=255) gagaAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACct > 7:345542/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGt < 6:350232/103‑1 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTta > 2:224915/1‑110 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGc > 6:201527/1‑129 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAc > 4:367008/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAc > 6:71060/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAc > 4:197450/1‑139 (MQ=255) | CTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAC > pSIJ663_pHT315_araE_xy/5164‑5440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |