| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 414,827 | G→A | 6.2% | intergenic (+257/‑515) | U712_01885 → / → U712_01895 | Phenolic acid decarboxylase subunit C/AB hydrolase superfamily protein yclE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 414,827 | 0 | G | A | 6.2% | 206.3 / 2.3 | 64 | intergenic (+257/‑515) | U712_01885/U712_01895 | Phenolic acid decarboxylase subunit C/AB hydrolase superfamily protein yclE |
| Reads supporting (aligned to +/- strand): ref base G (26/34); new base A (2/2); total (28/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.45e-01 | |||||||||||
CATGGAGATCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGATCAGTGCAGGTGAAATCA > CP006881/414690‑414958 | cctGGAGATCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTg < 8:242244/136‑1 (MQ=255) tGGAGATCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTAt > 3:259897/1‑139 (MQ=255) aTCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAACCAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGAGAACTGTAtct > 2:304906/1‑134 (MQ=255) aTCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGAGGTGCAGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAg > 8:105629/1‑139 (MQ=255) tgtgAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCg > 8:193944/1‑139 (MQ=255) tgAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCg < 6:330468/137‑1 (MQ=255) ccGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTATATGTCAGACCGTCTCtt > 8:99155/1‑139 (MQ=255) ccGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTATATGTCAGACCGTCTCtt > 8:92754/1‑139 (MQ=255) gAAAGCATTACAAATTCCGAAAAATACAATCCAGCGTTTAAAATAGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCCTGAACTGTATTTCAGACCGTCTCttt > 5:94237/1‑137 (MQ=255) gAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCg > 3:312804/1‑130 (MQ=255) gAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCttt > 7:72042/1‑137 (MQ=255) gAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCAGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCg < 4:312804/130‑1 (MQ=255) aaaGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAg < 2:260680/139‑1 (MQ=255) cATTACAAATTCCGAAAAATACAATCGAGCTTTTAAAATTGATCCAAAGTAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAgctgc < 6:94237/139‑1 (MQ=255) cccGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAg > 3:234788/1‑139 (MQ=255) cccGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAg > 7:342614/1‑139 (MQ=255) cccGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAg < 1:195392/139‑1 (MQ=255) ccGAAAAATACAATCCAGCGTTTAAAATTGATCCAACGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAg < 3:197818/138‑1 (MQ=255) tCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTTAAGTTCCGGCGGTGACGGAACGAAAGGCTTGATCCTCGTGAACTGTATGTCAGAACGACTCTTTGAGCTGATAGACGAGAGCTGCCTGAATgag > 4:323907/1‑138 (MQ=255) cAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAag < 8:72042/139‑1 (MQ=255) cGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAagcag > 5:22010/1‑139 (MQ=255) cGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAagcag > 4:361344/1‑139 (MQ=255) cGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGAGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGTGAGATGCCTGAATGAGAagcag > 7:54137/1‑139 (MQ=255) aaaaTTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGa < 1:3900/139‑1 (MQ=255) aaaTTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGa < 4:259897/138‑1 (MQ=255) gATCCAAAGGAAACAGAAACAGCAATTGAAGGTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCt < 6:19572/138‑1 (MQ=255) aTCCAAATGAAACAGAAACAGCAATAGAAGTTCCGGCGGTGCAGGAACGAAAGGCTTCATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTGGACGGGAGCTCCCTGAAAGAGAAGAAGCATGAGGCCTTc > 1:26128/1‑139 (MQ=255) aTCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATgaga > 1:251231/1‑122 (MQ=255) aTCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATgaga < 2:251231/122‑1 (MQ=255) aTCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTc > 1:287178/1‑139 (MQ=255) aTCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTc > 6:120011/1‑139 (MQ=255) ctaaGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGt < 3:323907/136‑1 (MQ=255) gaaacagaaacaGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCa < 4:234788/139‑1 (MQ=255) gaaacagaaacaGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCa < 7:193944/139‑1 (MQ=255) aaacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCT‑TTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 5:139971/139‑1 (MQ=255) aacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 5:120011/139‑1 (MQ=255) aacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 7:278347/139‑1 (MQ=255) aacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 7:159200/139‑1 (MQ=255) aacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 6:47394/139‑1 (MQ=255) aacagaaacagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCaaa < 5:146973/139‑1 (MQ=255) catcAATTGTAGTTCAGTCTGTGCCGGAACGAAAGGCTTTATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGATCTGACTGAATGAGAAGCAGCATGATGCCTTCGTTCTGCAAACAGTATCa < 8:54137/136‑1 (MQ=255) cagCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCa < 6:22010/139‑1 (MQ=255) aTTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGa > 1:266433/1‑139 (MQ=255) ccGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGa < 3:180139/49‑1 (MQ=255) ccGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGa > 4:180139/1‑49 (MQ=255) gcggTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCa < 8:225672/139‑1 (MQ=255) ggTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg < 3:361344/139‑1 (MQ=255) ggTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg < 8:342614/139‑1 (MQ=255) ggTGCCGGAACGAAAGGCTTGATCCGCGTGAACTATATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg < 7:92754/139‑1 (MQ=255) ggTGCCGGAACGAAAGGCTTGATCCGCGTGAACTATATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg < 7:99155/139‑1 (MQ=255) cGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt < 6:178059/139‑1 (MQ=255) cGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt < 5:347050/139‑1 (MQ=255) aTCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg > 8:387243/1‑118 (MQ=255) aTCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATg < 7:387243/118‑1 (MQ=255) cgTGAACTGTATGTCAGAGCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt < 2:41497/123‑1 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCa < 6:198380/111‑1 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCa > 5:198380/1‑111 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt > 7:76120/1‑123 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt > 1:41497/1‑123 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt > 3:26115/1‑123 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt < 8:76120/123‑1 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGAt < 4:26115/123‑1 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGATCAGTGCAGGTGAAat > 4:216733/1‑138 (MQ=255) cgTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGATGGCCGCATGCCTCTATGATCAGTGCAGGTGAAatc > 3:22767/1‑139 (MQ=255) gTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGGCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGATCAGTGCAGGTGAAatca < 1:304906/139‑1 (MQ=255) | CATGGAGATCCTGTGAACCGGAAAGCATTACAAATCCCGAAAAATACAATCCAGCGTTTAAAATTGATCCAAAGGAAACAGAAACAGCAATTGAAGTTCCGGCGGTGCCGGAACGAAAGGCTTGATCCGCGTGAACTGTATGTCAGACCGTCTCTTTGAGCTGCTTGACGGGAGCTGCCTGAATGAGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGGCCGCATGCCGCTATGATCAGTGCAGGTGAAATCA > CP006881/414690‑414958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |