| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,963,941 | A→G | intergenic (‑128/+152) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,963,941 | 0 | A | G | 96.5% | 207.8 / NA | 57 | intergenic (‑128/+152) | U712_15285/U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (52/3); minor base T (0/2); total (52/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.27e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAAATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTATTCAA > CP006881/2963805‑2964072 | ttGTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGCCATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGAt > 4:424566/1‑139 (MQ=255) atatTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGACAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATcgcg > 3:326339/1‑139 (MQ=255) atatTTCTCCTCCTCTGTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATGAAATTAGACAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCATCATGCAAGATTATcgcg > 4:131701/1‑139 (MQ=255) ctcctcctcTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGc > 5:433050/1‑139 (MQ=255) ctctTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCAtttt > 7:240504/1‑139 (MQ=255) tGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTc > 3:406225/1‑138 (MQ=255) tCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCt > 6:23004/1‑138 (MQ=255) ttttATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATaaaaa > 4:162146/1‑138 (MQ=255) gacagtgtCAGTTCTTAGAAATTTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGAAAAAAAGTTTCCCTCATGAATTATTATCGCGTTTGGCAATTTTTTTCAA‑GATGATTTACATAAAAAAACCGGCt < 6:298083/133‑1 (MQ=255) tgttgtCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTggg > 5:28572/1‑139 (MQ=255) tgttgtCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTggg > 3:71686/1‑139 (MQ=255) tgttgtCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTggg > 4:99098/1‑139 (MQ=255) tgttgtCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTggg > 8:288651/1‑139 (MQ=255) tCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTcag > 3:336464/1‑138 (MQ=255) aGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTcagcag > 5:18586/1‑139 (MQ=255) aGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTcagcag > 8:352226/1‑139 (MQ=255) aGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTcc > 6:262908/1‑139 (MQ=255) aGACATGTGACATTAAATTAGCCAAAAGAATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGAGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCTGTct > 5:298083/1‑138 (MQ=255) aTGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 1:217313/1‑139 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCt > 2:368669/1‑95 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCt < 1:368669/95‑1 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 4:194735/1‑138 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 8:285620/1‑138 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 3:49822/1‑138 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACg > 3:186151/1‑139 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGACCAAAc > 6:254306/1‑138 (MQ=255) tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTAGCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGGCAGCAGCCGGTCCAAAc > 5:39599/1‑138 (MQ=255) tgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 8:224405/1‑136 (MQ=255) gACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGt < 1:188425/86‑1 (MQ=255) gACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGt > 2:188425/1‑86 (MQ=255) aTTAAATTAGCCAAAAGCATGTGTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTGTGGCCAGTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAgg > 6:53003/1‑139 (MQ=255) aaaTTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGAt > 5:285657/1‑139 (MQ=255) aaTTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATg > 1:8304/1‑139 (MQ=255) ccAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTc > 3:221821/1‑138 (MQ=255) ccAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACAGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTc > 1:159227/1‑138 (MQ=255) aaGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACg > 3:141909/1‑138 (MQ=255) aaGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACg > 1:189670/1‑138 (MQ=255) aGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGATGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGaa > 6:240280/1‑139 (MQ=255) attaaCACAGCAAAAAATGTTCCCCTAATCAACTTTTAGCGGGTTT‑GCCATTTTTTTCAATGCTTTTTAAAAAAAAAACCCCGGCTGGGTCAGCCGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTAc < 6:79646/138‑1 (MQ=255) tttaCACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTg > 5:141312/1‑139 (MQ=255) acaGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTaa > 3:242540/1‑137 (MQ=255) acaGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTaa > 1:141942/1‑137 (MQ=255) acaGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTaa > 3:108658/1‑137 (MQ=255) acaGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGAAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTaa > 4:195144/1‑137 (MQ=255) ctggACAAAAATTTTCCCTAATGAAAGATTATGGCGTTTGGCCATTTTTTTCAA‑GATTTTTAACATAAAAAACCCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAg < 7:224405/137‑1 (MQ=255) aGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAg > 2:276769/1‑138 (MQ=255) ggACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCATCAGCCGGTCCAAACGAGAAGGGATGTATTCAACTAACACTTTTACTGTAACAGc > 7:303628/1‑138 (MQ=255) ggACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGc > 8:28354/1‑138 (MQ=255) gACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGcac > 5:79646/1‑139 (MQ=255) gACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGca > 2:66712/1‑138 (MQ=255) gACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGca > 4:406839/1‑138 (MQ=255) aCAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGca > 7:313885/1‑137 (MQ=255) ttCCCTCATGCAAGATAAACGCGTTTGGACATTTATGTCAA‑GCTGATTTACATAAAAAAACCTGCTGGTTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTATTACTTTAACAGCACAGTGACAta > 1:137231/1‑137 (MQ=255) tCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTa > 3:357013/1‑139 (MQ=255) aTGCAAGATTATCGCGTTTGGCCATTTTTGTCGC‑GCTGATTTACAGAAAAAAACCGGCTGGGTCAGCAGCCGGTCAAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAGCAGCGCAGTGTCATTTATTaaa > 2:131319/1‑138 (MQ=255) aTGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTAGTGTAACAGCACCGTGTCATTTATTCaa > 2:137434/1‑138 (MQ=255) aTGCAAGATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTATTCaa > 2:113053/1‑138 (MQ=255) | TTGTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAAATTATCGCGTTTGGCCATTTTTGTCAA‑GCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTATTCAA > CP006881/2963805‑2964072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |