| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 1,947,717 | C→T | P832P (CCG→CCA) | U712_09655 ← | Plipastatin synthase subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,947,717 | 0 | C | T | 93.2% | 83.9 / ‑1.5 | 47 | P832P (CCG→CCA) | U712_09655 | Plipastatin synthase subunit A |
| Reads supporting (aligned to +/- strand): ref base C (1/1); major base T (9/32); minor base G (3/0); total (14/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.66e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTGCCGCTTCAATTTCTCCCGGCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCCGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTACGGCTAAAT > CP006881/1947583‑1947841 | aGTGCCGCTTCAATTTCTCCCGGCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTACCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCGGGGt > 3:151259/1‑139 (MQ=255) cgtCAATTTCTCCCGGCTCAATCCGGTTGCCGCGGGTTTTTACCTGGTCATACGGGCGCCCGAGGGATTAAACAATACCGGCAGGGGGCCCGCGCGCCCCCTCCCCGGGTTTGTACATGCGTTGCCCGGGGGTaaaagg > 2:87108/3‑137 (MQ=2) cTTCAATTTCTCCCGGCTCAATCCGGTAGCCGCGGATTTTTACCTGATAATACGTGCGCCCGCGGCAATCAACATTACCGTCACGGAGCCAGCCCGCCCCATCCCCGGTTTTTTACATGCGTT‑CCCCAGGTTAAAACgg > 6:362641/1‑139 (MQ=11) aaTTTCTCCCGGCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTc < 1:46911/138‑1 (MQ=37) gCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACg < 5:193590/139‑1 (MQ=21) gCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACg < 1:336720/139‑1 (MQ=21) aaTCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGTTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGctcc < 6:157481/139‑1 (MQ=21) ctCCGGTAGCCGCGGATTTTTACCTGATCATCGGTGCGCCCGAGGTATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGTTCTTCAAGAAAACGctcc < 6:220693/137‑1 (MQ=255) gcgGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATgcc > 2:247339/1‑139 (MQ=21) gATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATgccggc < 7:87663/139‑1 (MQ=21) tttACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGa < 7:53220/138‑1 (MQ=21) tttACCTGATCATCCGAGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCTGGTTTGTACATGCGTT‑CCCGTGGTTAAAACGGGTCTTCAAGAAAACGCTCGTCCGTTAATGCCGGCCGa < 7:140015/138‑1 (MQ=11) gATCATCCGTGCGCCCGAGGAATTCATCATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAAt > 1:249840/1‑138 (MQ=17) gATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAAt > 2:260779/1‑138 (MQ=17) gATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCCGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAAt > 2:117320/1‑138 (MQ=32) atcatcCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATaa < 4:183215/139‑1 (MQ=17) ccGTGCGCACTAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACct < 7:170340/137‑1 (MQ=12) gTGCGCCCGAGGAATTCAACATTCCAGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTgg > 3:223461/1‑139 (MQ=17) aaTTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTc < 2:170356/139‑1 (MQ=17) aaTCCAACTTTCCCGTACGGGAGACTGCGCGCCACATCCCCGGGTTTGTAACTGCTTA‑CCCCTGGTTAATACGGGTCTTCACGACAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTc < 6:64417/139‑1 (MQ=11) aTTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTc < 2:263324/138‑1 (MQ=17) cAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCgg < 5:80064/138‑1 (MQ=17) aaCATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAACCGGGGCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa < 2:284085/139‑1 (MQ=12) aaCATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa < 1:87108/139‑1 (MQ=17) aaCATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGGAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa < 4:2675/139‑1 (MQ=17) aaCATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTGTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa < 6:152034/139‑1 (MQ=17) cccGGCAGGGAGCCCGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGATAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTa < 8:298988/138‑1 (MQ=255) cAGGGAGCCAGCGCGCCACATCCCCGGGTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTc < 4:69638/139‑1 (MQ=21) ccgcccgcCACACCCCCGGTTTTGAACATCCGAG‑CCCCTGGGAAAAACGGGGCATCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGa < 1:428809/134‑1 (MQ=11) cAGCGCGCCACCTCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCTAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGa < 3:363814/139‑1 (MQ=255) cAGCGCGCCACATCCCCGGTTTTGTACATGCGTG‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGa < 3:23321/139‑1 (MQ=21) cAGCGCGCCACATCCACGGTTTTGTACATGCGGT‑CCGCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGa < 8:122787/139‑1 (MQ=255) ccACATCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGa < 2:88078/139‑1 (MQ=21) ctcaTCCCCGGTTTTGTACATGCGTT‑CCCCCGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGaa < 1:117320/137‑1 (MQ=21) cacaTCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa > 8:273321/1‑112 (MQ=17) cacaTCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCa < 7:273321/112‑1 (MQ=17) cacaTCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGaa < 5:224810/139‑1 (MQ=21) cacaTCCCCGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGaa < 6:98959/139‑1 (MQ=21) gcGGTTTTGTTCATGCGTT‑CCCCTGGGTAAAACGGGTCTTGAAGAAAACGCTCCTCCGTTAAAGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTa < 1:376696/138‑1 (MQ=255) ccGGTTTTGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTa < 1:260779/139‑1 (MQ=21) ttGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTACGGCt < 5:294061/138‑1 (MQ=21) tGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTACGGCTa > 4:319313/1‑138 (MQ=21) tGTACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGCCCGATTCAAAAACCCTCTGCCACCACCCGCTCCGGCAATGTACCGTTCGCCGGCGCCACCGGAAGGCTGTACGGcga > 2:376696/1‑136 (MQ=11) tACATGCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTACGGCTAAAt > 2:52309/1‑139 (MQ=21) tACATGCGTT‑CCCCGGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGGTCGCCGGCGACCCCCGACGGCTGTACGGCTAAAt > 5:81348/1‑139 (MQ=11) gCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATgccggc > 7:227278/1‑55 (MQ=255) gCGTT‑CCCCTGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATgccggc < 8:227278/55‑1 (MQ=255) cccctGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCg > 3:301288/1‑98 (MQ=37) cccctGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCg < 4:301288/98‑1 (MQ=37) | AGTGCCGCTTCAATTTCTCCCGGCTCAATCCGGTAGCCGCGGATTTTTACCTGATCATCCGTGCGCCCGAGGAATTCAACATTCCCGTCAGGGAGCCAGCGCGCCACATCCCCGGTTTTGTACATGCGTT‑CCCCCGGGTAAAACGGGTCTTCAAGAAAACGCTCCTCCGTTAATGCCGGCCGATTCAAATAACCTCTGGCAACACCCGCTCCGGCAATGTACAGTTCGCCGGCGACACCGGAAGGCTGTACGGCTAAAT > CP006881/1947583‑1947841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |