Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,578,466 Δ1 bp 100% intergenic (‑59/‑76) U712_18365 ← / → U712_18370 Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,578,4660A.100.0% 307.1 / NA 67intergenic (‑59/‑76)U712_18365/U712_18370Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (28/39);  total (28/39)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTGCAGGGAACACCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAGGCTGTTGTGGCGATT  >  CP006881/3578329‑3578598
                                                                                                                                         |                                                                                                                                    
ttGCAGGGAACACCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACGTTTCTGAAAATATATACAACCTATCCa                                                                                                                                      >  3:201123/1‑138 (MQ=255)
     gggAACACCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCaaaaaac                                                                                                                                >  7:105238/1‑138 (MQ=255)
       gAACACCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCaaaaaactt                                                                                                                              >  7:53415/1‑136 (MQ=255)
         acacCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCAGCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCaaaaaacttt                                                                                                                             <  3:205528/138‑5 (MQ=255)
          cacCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACttttt                                                                                                                          <  8:53415/139‑1 (MQ=255)
          cacCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACttttt                                                                                                                          >  8:160303/1‑139 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  2:69296/139‑1 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  2:315574/139‑1 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  3:224427/139‑1 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  1:57065/139‑1 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTCTTTAGAt                                                                                                                     <  3:170822/139‑1 (MQ=255)
               aGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTATCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  8:378155/139‑1 (MQ=255)
                gCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTGGTTTCTTCCGCTCTCATTGTTTGATCACCTCAGCAACATTCTGAACCCTTTTCTGAAAATATATAAAACCGATCCAAAAAACTTTTTTAGATg                                                                                                                    >  1:177826/1‑139 (MQ=255)
                gCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATGACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATg                                                                                                                    >  5:159622/1‑139 (MQ=255)
                gCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCATCTCTCATTGTTTAATCACCTCCGCAACATTCTGAACAATTTTCTGAAAATATATACAACCAATCCAAAAAACTTTTTTAGATg                                                                                                                    >  8:56781/1‑139 (MQ=255)
                gCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTATTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATg                                                                                                                    >  6:388385/1‑139 (MQ=255)
                  gTTTACGAAAAAACTGCCGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCCCCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATg                                                                                                                    >  1:125346/1‑137 (MQ=255)
                   tttACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAg                                                                                                                 <  4:85042/139‑1 (MQ=255)
                      aCGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTGAAGACCTCCGCACCAATCTGAACAAATTTCTGCAAATATAAAAAACCTATCCAAAAAACTTTTTTAGAGTTAGttt                                                                                                              >  6:293046/1‑139 (MQ=255)
                      aCGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGtt                                                                                                               <  3:188724/138‑1 (MQ=255)
                      aCGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCGTTTCTTCCTCGCTCAATGGTTCATCACCTCACCAACATTCTGAACACTTTTCTGAAAATATTTACAACCTATCCAACAAACTTTTTTAGATGTAGgtt                                                                                                              >  4:324348/1‑139 (MQ=255)
                         aaaaaaCTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGca                                                                                                           <  7:13834/139‑1 (MQ=255)
                         aaaaaaCTGCTGAAGGTTTTTGACGTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGca                                                                                                           <  7:147744/139‑1 (MQ=255)
                         aaaaaaCTGCTGAAGATTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGca                                                                                                           <  5:322349/139‑1 (MQ=255)
                          aaaaaCTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTCTCCAAAAAACTTTTTTAGATGTAGGTTGcac                                                                                                          >  8:331033/1‑139 (MQ=255)
                           aaaaCTGCTGAAGTTTTTTGACTTGAGAAGTTTTGTTTTATTCCGCTCTCATTGTTTAATCACCTCAGCAACATTCTGCACACATTTCTGAAAATATATAAAACCTATCCCAAAAACTTTTTTAAATGTAGttttga                                                                                                           >  6:7902/1‑134 (MQ=255)
                                  ctgAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     <  8:204697/120‑1 (MQ=255)
                                  ctgAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGAt                                                                                                                     >  7:204697/1‑120 (MQ=255)
                                      aGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGaa                                                                                              <  7:160303/139‑1 (MQ=255)
                                          ttttGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAat                                                                                           <  3:122542/138‑1 (MQ=255)
                                          ttttGACTTGAGAAGTTTTATTTTGTTGCTATCTCATTGGTTGATCACCTCAGCAACATTATGAACACATTTCTGAAAATAATTACAACCTAAGCAAAAAACATTTTTAGATGTAGTTTGGACAGACTGAACCaaaaa                                                                                           >  4:233309/1‑137 (MQ=255)
                                            ttGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAatat                                                                                         <  1:65037/138‑1 (MQ=255)
                                                cTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTAtt                                                                                    <  1:331728/139‑1 (MQ=255)
                                                  tGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGAACAGACTGAACGAAAATATGTAtttt                                                                                  >  1:67372/1‑139 (MQ=255)
                                                   gagaAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTAtttt                                                                                  <  6:15656/138‑1 (MQ=255)
                                                                     ccTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaa                                                                <  7:196677/138‑1 (MQ=255)
                                                                     ccTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaa                                                                <  3:233309/138‑1 (MQ=255)
                                                                     ccTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaa                                                                <  1:58146/138‑1 (MQ=255)
                                                                      ctctctCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaaa                                                               <  1:177195/138‑1 (MQ=255)
                                                                           tcATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGt                                                           <  7:140093/137‑1 (MQ=255)
                                                                           tcATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGt                                                           <  3:45511/137‑1 (MQ=255)
                                                                             aTTGTTTCATCACCTCATCAACAATATGAACACTTATCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGa                                                       <  8:383893/139‑1 (MQ=255)
                                                                             aTTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGa                                                                                                       >  2:12624/1‑91 (MQ=255)
                                                                             aTTGTTTCATCACCTAAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGa                                                                                                       <  1:12624/91‑1 (MQ=255)
                                                                                 tttCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACa                                                    <  2:177826/138‑1 (MQ=255)
                                                                                 tttCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACa                                                    <  5:388385/138‑1 (MQ=255)
                                                                                 tttCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACa                                                    <  5:101502/138‑1 (MQ=255)
                                                                                     atcaCCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACa                                               >  6:350183/1‑139 (MQ=255)
                                                                                             aGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGaa                                                                                                  >  1:399680/1‑80 (MQ=255)
                                                                                             aGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGaa                                                                                                  <  2:399680/80‑1 (MQ=255)
                                                                                             aGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCt                                       >  5:386739/1‑139 (MQ=255)
                                                                                               cAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTg                                     <  6:386739/139‑1 (MQ=255)
                                                                                                aaCATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGc                                    <  2:125346/139‑1 (MQ=255)
                                                                                                  cATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaa                                                                >  6:218902/1‑109 (MQ=255)
                                                                                                  cATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCaaa                                                                <  5:218902/109‑1 (MQ=255)
                                                                                                    ttCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGaa                                >  5:283872/1‑139 (MQ=255)
                                                                                                       tGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCt                                   <  7:258242/133‑1 (MQ=255)
                                                                                                       tGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCt                                   >  8:258242/1‑133 (MQ=255)
                                                                                                         aaCACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCt                                   >  4:403932/1‑131 (MQ=255)
                                                                                                         aaCACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCt                                   <  3:403932/131‑1 (MQ=255)
                                                                                                         aaCACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACa                              >  5:273219/1‑136 (MQ=255)
                                                                                                         aaCACTTTTCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATa                            <  5:350183/138‑1 (MQ=255)
                                                                                                              ttttCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACt                      >  3:86178/1‑139 (MQ=255)
                                                                                                              ttttCTGAAAATATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACt                      >  1:383837/1‑139 (MQ=255)
                                                                                                                     aaaaTATATACAACCTATCCAAAACACTTTTTTAGATGTAGTTTGCACAGACTGAAAGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAAGATAGAGACTTGGAgg                <  6:128378/138‑1 (MQ=255)
                                                                                                                     aaaaTATATACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAgg                <  6:273219/138‑1 (MQ=255)
                                                                                                                        atatatACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACa                                                    <  7:293456/99‑1 (MQ=255)
                                                                                                                        atatatACAACCTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACa                                                    >  8:293456/1‑99 (MQ=255)
                                                                                                                                  ccTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAGTCTGTTGTGGCGAtt  >  6:191307/1‑139 (MQ=255)
                                                                                                                                  ccTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAGGCTGTTGTGGCGAtt  >  5:23121/1‑139 (MQ=255)
                                                                                                                                  ccTATCCAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAGGCTGTTGTGGCGAtt  >  5:28494/1‑139 (MQ=255)
                                                                                                                                         |                                                                                                                                    
TTGCAGGGAACACCCAGCGTTTACGAAAAAACTGCTGAAGTTTTTTGACTTGAGAAGTTTTCTTTTCTTCCTCTCTCATTGTTTCATCACCTCAGCAACATTCTGAACACTTTTCTGAAAATATATACAACCTATCCAAAAAAACTTTTTTAGATGTAGTTTGCACAGACTGAACGAAAATATGTATTTTTTTGAGAGGAGTGCCAAAAACGTATGAACATGACATTGCGTCTTGCTGAACATAGAGACTTGGAGGCTGTTGTGGCGATT  >  CP006881/3578329‑3578598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: