| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 5,478 | 0 | G | A | 97.0% | 11972.6 / 29.1 | 4659 | intergenic (+747/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base G (112/16); major base A (1816/2486); minor base C (201/0); total (2141/2518) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 4661 total aligned reads displayed.
TCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTT > pSIJ663_pHT315_araE_xy/5340‑5613 | tAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGCCTGGAGCGGCGATTTTTTTGCTTCTCGTCA‑GGGGGGCGGAGcc > 8:172171/1‑138 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTTTGTTGCGCGTCA‑GGGGGGCGGAGCCGAt > 7:344376/1‑139 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTTCTGATCGTCA‑GGGGGGCGAAGCCTAt > 6:395536/1‑139 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGCTGCTCGTCA‑GGGGGGCGAAGCCTAt > 7:62533/1‑139 (MQ=255) gggcGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGaaaaa < 6:371164/135‑1 (MQ=255) ggTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAACCGCCTGGTATCTTTTTAGTCCTGTCGGGTTTCGCCACCGGTGCCGTGGGGGGCGAGTTTTGTGTGGGGGGGCG‑GGGGGGCGGGGCCGATGGAAAAAc > 3:22201/1‑139 (MQ=255) gAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGCGCGTCGATGTTTGTGTTGAGCGTCA‑GGGGGGGGAACCCGATTGAAAAACGcccg > 1:155508/1‑137 (MQ=255) gAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAg > 5:388602/1‑139 (MQ=255) gagtGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTGTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGGAGCCTATGGAAAAACGCCAGCAAcgc < 2:274104/139‑1 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGCGAGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc > 8:402340/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc > 8:375489/1‑139 (MQ=255) gcgcgcACGAGGGAGCATCCAGGGGGACCCCCCTGGTATCTTTATAGTCCTGTCGGGTTGCGCCACCTCTCACTTGCGCGGCGATTTTTGTGACGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg < 1:365334/137‑1 (MQ=255) gagCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg < 8:114752/139‑1 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTTTGATGAGCGTCA‑GGGGGGCGAAGCCTATGGAAAAACCCCACCAACCCGGCCt > 4:288143/1‑139 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTTATGCTCGTCA‑GGGGGGCCAAGCCAATGGAAAAACCCCACCAACGCGGccg > 2:105709/1‑138 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GCGGGGCGAAGCCTATTGAAAAACGCCAGCAACGCGGccg > 2:340891/1‑138 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGAGTTTTGTGCTGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCt > 8:69534/1‑139 (MQ=255) aCGAGGGAGCTTCCAGGGGGAAACGACTGGTATCTTTATAGTCCTGTCGGGTTTCGACACCTCTTACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCCAAGCCTATCGAAAAACGCCAGCACCGCGTCCtttt > 7:233259/1‑139 (MQ=255) ttgggAGATTCCAGGGGGAAACGCCGGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCTTCGATTTTTGTGATGCTCGTCT‑GGGGGGCTAAGCCTATGCAAAAACGCCAGCAACGCGGCCTTTTTa < 8:344376/137‑1 (MQ=255) gAGGGAGCTTCCTGGGGGAAACGCCTGTTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa < 4:186952/139‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCCCCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCGATGGAAAACCGCCCGCCACGCGGCCTTTTTa > 7:182671/1‑139 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa < 2:251634/139‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa < 3:144333/139‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa < 3:172298/139‑1 (MQ=255) cTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGCGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTcc < 7:375035/139‑1 (MQ=255) cTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTcc < 4:96753/139‑1 (MQ=255) cTTCCAGGGGGAAACGCCTGGTAGCTTTATCGTCCTGTCGGGTGTCGCCACCTCTGCCTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTcc < 4:347705/139‑1 (MQ=255) aGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcc < 4:218333/139‑1 (MQ=255) aaCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATTCTAGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTTCGGTTCctggacttttgct > 6:11210/1‑139 (MQ=255) aaCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgct > 2:30518/1‑139 (MQ=255) ggTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGGGCGTGA‑TGGGGGCGAAGCCTATTGTAAAACCCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgcgggccttt > 7:160298/1‑139 (MQ=255) ttataTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGGGAAGCATATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcctt < 1:224110/136‑1 (MQ=255) tATCTTTATAGTCCTGGCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggccttttg < 7:209654/139‑1 (MQ=255) tttATAGTCCTGTCGGGTTTCGCCACCTCTGCCTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACCGTTCCTggccttttgctggccttttgctga > 8:233648/1‑137 (MQ=255) tttATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTca > 1:100440/1‑139 (MQ=255) tattGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGGCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCAC < 1:398280‑M1/138‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTggccttttgctggccttttgct < 3:384560/135‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTggccttttgctggccttttgct < 5:357957/135‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCGATGGAAAAACGCCAGCAACGCGGCCGTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGGTCACA > 5:28116‑M1/1‑139 (MQ=255) tataGGCCTGGCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCAC < 5:131507‑M1/138‑1 (MQ=255) aGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGGCGCCTATGGAAAAACGCCAGCAACGAGGCCTTTTTTCGGTTCCTGGGCTTTTTCTGGACGTTTGCTCACATGT > 3:311470‑M1/1‑139 (MQ=255) aGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT > 3:50018‑M1/1‑139 (MQ=255) aGTCCTGGCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcc < 4:404645/114‑1 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACg > 6:240054/1‑103 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 3:283395/139‑1 (MQ=255) tCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 4:374217/138‑1 (MQ=255) tCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTc < 1:125588/139‑1 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttg > 6:342859/1‑115 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCtt > 4:132032/1‑138 (MQ=255) tGTCGGGTTTAGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCGATGGAAAAACGCCACCAACGCGGCCGTTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCACATTTTCtt > 8:13947/1‑138 (MQ=255) gTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGGTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTTCTCACATGTTGTTTc > 3:77040/1‑139 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGCAGCCTATGGAAAAACGCCAGCCACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTTGCCGTTTGGTCACATGTTGTTTcc > 5:312181/1‑139 (MQ=255) tttCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGt > 6:143577/1‑139 (MQ=255) tCGCCACCTCTGACTTGAGCGTCGAGTTTTGTGATGCTCGTCAGGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGGCGGTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTTCTCACATGTTCGTTCCTGCGt > 7:316387/1‑138 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 6:95493/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 5:247981/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 5:191339/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTAGATTGTTGTGATGCGCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 1:305129/138‑1 (MQ=255) cGCCAACTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTAA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 8:315592/138‑1 (MQ=255) gCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGGCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATc < 1:68716/139‑1 (MQ=255) aCCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATcccc < 2:220720/139‑1 (MQ=255) ccTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCt < 5:81896/139‑1 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCTAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTc < 1:333998/138‑1 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 1:277420/137‑1 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCt < 7:287804/139‑1 (MQ=255) gtgCGTCGATTTTTGTGATGCTCGTCT‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGTCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCtgtg < 5:153581/136‑1 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCCCATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGa > 6:274717/1‑139 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 6:309798/109‑1 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGa > 4:67364/1‑139 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTATGTGGa > 4:2528/1‑139 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCAC < 8:285169‑M1/104‑1 (MQ=255) aGCGTCGATTTTTGTGATGCTAGTCA‑CGGGGGCGAAGCCAATGGAAAACCGCCAGCAACGCCGCCTTTTTACGTTTCCTGGCCATTTGCTGGCCTTTTGCACACATGTTCTTTCCTGCGTTATCCCCTGATTCtgtgta > 6:200007/1‑137 (MQ=255) gcggcgATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:135732/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 5:173842/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:114787/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 3:120984/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTAAGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 1:186183/139‑1 (MQ=255) cGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:402340/138‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa < 6:169056/139‑1 (MQ=255) tCGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAAc < 4:101407/139‑1 (MQ=255) cGATTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCGATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAAcc > 2:96606/1‑139 (MQ=255) aTTTTTGTGATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCg > 7:260468/1‑138 (MQ=255) tgtgATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 5:337905/138‑1 (MQ=255) tgtgATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 4:319812/138‑1 (MQ=255) tgtgATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 8:255892/138‑1 (MQ=255) tgtgATGCTCGGCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 7:90060/138‑1 (MQ=255) tgATGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAcc < 3:33694/138‑1 (MQ=255) aTGCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa > 5:221483/1‑106 (MQ=255) aTGCGCGTCA‑GGGGGGCGTATCCTATGGAAAAACGGCAGCAACGCGGACTTTTTACGGTTCGTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAAGCGTATTACCGcc < 1:257824/139‑1 (MQ=255) gCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgct < 3:362063/72‑1 (MQ=255) gCTCGTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCGTTTGCTCACATGTTCTTTCCTGCGGTATCCCCGGCTTCTGTGGATTACCGTATTACCGccgt > 6:64039/1‑137 (MQ=255) cTCGTCT‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCCGTTGATAACCGTATTACCGCCtt < 8:207597/138‑1 (MQ=255) gTCT‑GGGGGGCGAAGCCTAGGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtga < 2:134230/138‑1 (MQ=255) gTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgag > 3:25100/1‑139 (MQ=255) gTCA‑GGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgag > 3:195731/1‑139 (MQ=255) tCA‑GGGGGGCGAAGCGTATGGAAAAACGCCAGCAACGCGGCCGTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagt < 2:386354/139‑1 (MQ=255) gggggggCGAAGCCTATGGATACACGCCAGCAACGCGGCCTTTTTAAGGTTCCTGGCCGTGTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga < 4:15687/138‑1 (MQ=255) cggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga < 5:48286/138‑1 (MQ=255) ggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 2:60684/139‑1 (MQ=255) gggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCACTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTg > 2:178345/1‑139 (MQ=255) | TCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA‑GGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTT > pSIJ663_pHT315_araE_xy/5340‑5613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |