| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 986,184 | C→A | 25.1% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 986,184 | 0 | C | A | 25.1% | 146.6 / 6.2 | 74 | intergenic (+50/‑200) | U712_04810/U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| Reads supporting (aligned to +/- strand): ref base C (12/41); new base A (14/4); total (29/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCTGGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGACCATTG > CP006881/986058‑986318 | tgctgGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAAt > 1:35225/1‑139 (MQ=255) ctgGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTTATTTAAAC‑TTAT‑AAAACAAAAAAAACCAAAATAGCT‑TGGTTTTTGTTTGGTGAAAAAATTAAAAAAAAAAAAatt > 7:96786/1‑139 (MQ=255) ctgGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTAAACGTAAT‑CAACGAAAAACCAGCTCAATAGCT‑GGTTTTTTTTGTGGTGTAAAATTTAAAAAAAAAAAAatt > 3:311092/1‑139 (MQ=255) gCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTAAAAGTAATAAAACAAAAAACCA‑CCCAAAAGCTGGGTTTTTTTTGTGGTGAAAAATTTAAAAATAAAAAAttttt > 2:239075/1‑137 (MQ=255) gCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTAAACGTAAT‑AAACCAAAAAACACCGCAAGAGCG‑GGGTTTTTGTGTGGTGAAAAATTTAAAAAAAAAAAAtttttg > 3:120355/1‑136 (MQ=255) tCTGACGAATCTTCCTATATGACATGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGAT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGAt < 1:80838/139‑1 (MQ=255) tGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TGTTTTTTAAACGGTAT‑AAAAGAAAAAACCCCACAAAAGGTGGGTTTTTTGT‑TGGGGTAAAAATTAAAAATAAAAAATTTTTGGAttt > 2:90479/1‑139 (MQ=255) aCGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAACCCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGAtttt < 3:125685/138‑1 (MQ=255) tatGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTGAACCTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTTTGGTGAAAAATTTAAAAATAAAAAATTTTTCGATTTTTATAACAAtttttt > 3:381765/1‑137 (MQ=255) tGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTAAACGTAAT‑CAACGAAAAAACAGCTCAAGAGCT‑GGGTTTTTTTGTGGTGAAAAATTTAAAAATAAAAAATTTTTGGATTTTTATTAAAAtttttttt > 8:52520/1‑139 (MQ=255) tGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTAAACGTAAT‑AAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTTTCGATTTTTCTAAAAAATtttttt > 6:156530/1‑139 (MQ=255) aGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTAAACGTAAT‑CAACCAAAAAACACCTCAAGAGCG‑GGTTTTTTTTGTTGTGTAAAAATTAAAAATAAAAAATTTTTTGATTTTTATAAAAAATTTTTTTTAAt > 4:165623/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTAAACGTAAT‑AAACGAAAAACCAGATTAATAGCT‑GGTTTTTTGTTGGTTGAAAAATTTCAAAATAAAAAATATGTGGATTTTTATTACAATTTTGttttgtttt > 6:88376/1‑134 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑AAACGAAAAACCACCTCAAGAGCT‑GGTTTTTTTTTTGGTGAAAAATTTAAAAATAAAAAATTTTTCGATTTTTTTAAAAATTTTTTTTTAAttt > 5:351301/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTAAACGTAAT‑AAACCAAAAAACACCTCAAGAGCG‑GGGTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTTTAGATTTTTATAACAATTTTTTTTTAAttt > 2:120217/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTTAACGTATT‑AAAAGAAAAAACACCACAACCGCG‑GGTTTTTTGTGGGGGGTTAAAATTAAAAATAAAAAATTTTTGGATTTTTTTAACAATTTTTTTTTGAttt > 5:283420/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTGAACCGAAA‑AAACGAAAAACCAGCACCAGAGCG‑GGTTTTTTTTGTGGTGTAAAATTTCAAAATAAAAAATTTTTCGATTTTTCTTACAAATTTTTTTTCAttt > 6:161364/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTCAACGTAAT‑CAACGAAAAAACAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGTAAAATTTCAAAATAAAAAAATTGTCGATTTTTCTAACAATTTTGTTTTGAttt > 7:316779/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCG‑TGTTATTTAAACGTAAA‑AAACCAAAAACCAGCAACAGAGCG‑GGTTTTTTTTGTGGGTTAAAATTTTAAAATAAAAAATTTTTTGATTTTTTTAAAAATTTTTTTTTAAttt > 6:6693/1‑139 (MQ=255) ggCAGACCATTCATGTGAATGGCGGCCC‑TTTTATTTCAACCTAAT‑AAACCAAAAAACACCTCAATAGCT‑GGTTTTTTTTTTGGTGAAAAAATTAAAAATAAAAAAATTGAGGATTATTATAAAAATTTTGTTTTCAatt > 8:250348/1‑139 (MQ=255) cAGACCATTCATGTGAATGGCGGCCG‑TTTTTTTTTAACCTAAT‑AAAACAAAAACAAACGAAAGAGCT‑GGTGTTTTTTGTGGGGGTAAAATTTAAAAAAAAAAATTTTTGTGTTTTTTTAAAAAATTTTTTTTTAttttt > 5:312357/1‑139 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 6:38509/139‑1 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 2:35225/139‑1 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 7:43389/139‑1 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 5:156530/139‑1 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 8:359021/139‑1 (MQ=255) aGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTg < 3:68904/139‑1 (MQ=255) aCCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTgta < 1:307350/139‑3 (MQ=255) aCCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCa < 8:96786/139‑1 (MQ=255) aCCATTCATGTGAATGGCGGCCG‑TGTTTTTTTAAAGGAAT‑AAACCAAAAAACAACACAAACGCG‑GGGTTTTTTTGTTGGTTTAAATTTAAAAAAAAAAAAATTTTAGATTTTTTTTAAAAATTTTTTTTTAttttttg > 4:209285/1‑136 (MQ=255) aCCATTCATGTGAATGGCGGCCG‑TGTTATTTAAACGTAAT‑CAACGAAAAAACCCCGCAAGAGCG‑GGTTTTTTTTGTGGTGTAAAATTTTTAAAAAAAAAATTTGTAGAATTTTTTAACAATTTTTTTTTGAttttttg > 2:153524/1‑136 (MQ=255) aTTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtt < 7:131281/139‑1 (MQ=255) aTTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtt < 3:97803/139‑1 (MQ=255) tCATGTGAATGGCGGCCG‑TGTTATTTAAACATAAA‑AAAACAAAAAAAACCAGAAAAACA‑GGGTTTTTTTTTGGTGAAAAAATTAAAAAAAAAAAAATTTTGTATTTTTATAAAAAATTTTTTTTAATTTTTTAAAtttt > 4:283278/1‑139 (MQ=255) cATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt < 8:211386/138‑1 (MQ=255) aTGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtat < 5:161364/139‑1 (MQ=255) tgAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATATCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtatata < 1:243712/139‑1 (MQ=255) gtattgcgggCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtatata < 6:351301/133‑1 (MQ=255) aaTGGCGGCCG‑TTTTATTTAAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTAAAAAAAAAAAATTTGTCGATTTTTATAAAAATTTTTTTTTAATTTTTTGAATTttatttat > 2:6252/1‑138 (MQ=255) gcggcCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata < 8:292678/138‑1 (MQ=255) gcggcCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata < 3:362748/138‑1 (MQ=255) gcggcCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata < 6:126282/138‑1 (MQ=255) gcggcCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAAATTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata < 4:10055/138‑1 (MQ=255) cggcCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATAtt < 3:362444/139‑1 (MQ=255) gcCG‑TTTTATTTGAACGTAAT‑AAACGAAAAACCAGCTAAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTGGATTTTTCTAACAATTTTTTTTTCATTTTTGCAATTTTATATTTAATTTTGa > 1:97151/1‑139 (MQ=255) tATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGga < 2:84908/138‑1 (MQ=255) tttCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGgaga < 1:239075/138‑1 (MQ=255) tttCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGgaga < 5:6693/138‑1 (MQ=255) aCGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGaa > 7:188183/1‑139 (MQ=255) cGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAAt > 2:256110/1‑139 (MQ=255) acAACGAAAAACCAGCTCAACAGCT‑GCATTTTTCAGTGGTGAAAAATATCAAAATAAAAAATATCTCGATTTTTCTAACAATTATGTTATCAATATTGCAATTTTAAATAAAATATTGAGAATCAGAAAAGAATGATTc > 8:47536/2‑139 (MQ=255) aagaaCCAGCTCAATAGCT‑GGTTTTTTGTTTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTATAAAAATTTTTTTTTATTTTTTGCATTTTTATATATTATATTGAGTAGGAGAAATGAATGATTCGCGAcc < 7:133713/136‑1 (MQ=255) aaacaCCAGCTCCAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 8:316779/139‑1 (MQ=255) aaaaaCCCGCTCAAGAGGT‑GGTTTTTTGTGTGGTTAAAAATTTAAAAATAAAAAATTTGTCGATTTTTCTAAAAATTTTTTTTTAATTTTTGCAATTTTATATATAATATTGAGTAGGAGAACGGAATGATTCGCGAcc < 3:209285/139‑1 (MQ=255) aaaaaCCCGCTAAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTTTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 6:162626/139‑1 (MQ=255) aaaaaCCAGCTCAATAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 4:120355/139‑1 (MQ=255) aaaaaCCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 4:311092/139‑1 (MQ=255) aaaaaCCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 3:165623/139‑1 (MQ=255) aaaaaCCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGAAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 7:52520/139‑1 (MQ=255) aaaaaCCAGCTCAAGAGAT‑GGTTTTTTGTGTGGTGAAAAATATCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTAATTTTTGCAATTTTATATATAATATTCAGTAGGAGAAAGGAATGATTCGCGAcc < 4:307102/139‑1 (MQ=255) aaaaaCCAGCTAAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTAAAAATAAAAATTTTGTCTATTTTTCTAACATTTTTTTTTTCTTTTTTGAAATTTTATATATAATTTTGTGTAGGAGAAAGGAATGATTCGCGAcc < 3:17888/139‑1 (MQ=255) aaaaaCCAGCTAAAGAGAT‑GGTTTTTTTTGTGGTTAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAAAATTTTTGTTTTCATTTTTTCAATTTTATATATAATATTGAGTAGTATAAAGGATTGATTCGCGAcc < 3:163299/139‑1 (MQ=255) aaaaaCAATATCAATAGCT‑GGTTTTTTGTGTGGTGAAAAATTTAAAAATAAAAAATTTTTCGATTTTTCTAAAAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGATTAGGAGAAAGTATTGATTCGCGAcc < 7:250348/139‑1 (MQ=255) aaaaCCAGCTCAAGAGCT‑GTTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc < 1:120217/138‑1 (MQ=255) aaaCCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTTAAAAATTTAAAAAAAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGAAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAg < 1:381347/139‑1 (MQ=255) ccAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTAc < 3:78156/139‑1 (MQ=255) gagCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTTAGTAGGAGAAAGGAATGATTAGCGACCAGTACAAAtatatc > 8:133713/1‑137 (MQ=255) tttttttGTGTGGTGAAAAATTTCAAAATAAAAAATTTTTCTATTTTTCTAACAATTTTGTTTTATTTTTTGCAATTTTATATATAATATTGAGTAGGAGAACGGAATGATTCGCGACCAGTACAAATATAGTAGaaa < 5:384930/137‑1 (MQ=255) tttGTGTTGTTAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCAAACAATTTTGTTTAAATTTTTGAAATTTAATATAAAATATTGAGTCGGACAAAGGAATGATGCGCGACCAGTACAAATATAGTAGaaaaaaa < 6:349473/138‑1 (MQ=255) tgtgGTGAAAATTTTCAAAATAAAAAATTTGTCTTTTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATTTATAATATTGAGTAGTAGAAAGGAATGATTCGCGACCAGTACAAATATATTAGAAAAAAAAGaat < 7:402048/139‑1 (MQ=255) tggttAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGaata < 1:6252/138‑1 (MQ=255) tggtgAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTAATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGaata < 1:256110/138‑1 (MQ=255) tgAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGa > 1:254670/1‑139 (MQ=255) aTTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGACCATTg < 1:90479/139‑1 (MQ=255) | TGCTGGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCG‑TTTTATTTCAACGTAAT‑CAACGAAAAACCAGCTCAAGAGCT‑GGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGACCATTG > CP006881/986058‑986318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |