Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 993,550 | A→C | 23.0% | K84N (AAA→AAC) | U712_04850 → | General stress protein 69 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 993,550 | 0 | A | C | 23.0% | 106.0 / 5.8 | 61 | K84N (AAA→AAC) | U712_04850 | General stress protein 69 |
Reads supporting (aligned to +/- strand): ref base A (38/8); new base C (3/11); total (41/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.89e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCCGCGCCGCTCTTGATCAGGGGATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAGGTGCATTGGCCCGA > CP006881/993417‑993681 | tCCGCGCCGCTCTTGATCAGGGGATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGc > 7:191243/1‑139 (MQ=255) cgcgCCGCTCTTGATCCGGGGATTACCCTGATTGACACCCCACCGGCTTCCGGGTGCGGGCAGCCCGAGGAATTTGCCGGAAAGCCAATCAAAGAGTACGCCAAATGACACCAGGTGATTCTCGCAACCAAAACGGctc < 8:331798/139‑1 (MQ=255) cgccgcTCTTGATCAGGGGATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTctg > 3:148447/1‑139 (MQ=255) agggATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGaacaac > 5:262649/2‑139 (MQ=255) gggATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGaacaac > 3:29052/1‑138 (MQ=255) gggATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGaacaac > 5:275753/1‑138 (MQ=255) gATTACACTGTTTGACACCGCACGGGCTAAGGGCTTCGGCAAGCCCGAGTAAATTGTCGCAACGGCAAAAAACGATTCCGCAAAAAGCCACCCGGTTATTCTCCCAACTAAAACGGCTCTGGACTGGAAGAACAACCAg < 4:148447/139‑1 (MQ=255) gATTACACTGATTCACCCCGCCCCGGCTTACGGCTTCGGGACGGCCGAGGAAATGGTCGGAACGGCAATCAAAGAGTACGCCAAACGACACCAGGGGATTCTCCCAACGAACACGGCTCTGGACTGGAAGAACAACCAg < 2:18592/139‑1 (MQ=255) ttACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGATAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCACCGAAAACGGCTCTGGACTGGAAGACCAACCAGCt > 6:261584/1‑139 (MQ=255) tGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCg > 8:126214/1‑139 (MQ=255) tGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCg > 8:311122/1‑139 (MQ=255) tGATTGACACAGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCg > 5:86930/1‑139 (MQ=255) aTTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTTTCGGAAAGGCAAACAAAGAGTACGGCAAAAGAGACCAGGTGATTATCTCAACTAACACGGCTCTTGACTGGAAGAAAAACCAGCTGTTCCGc > 8:290288/1‑138 (MQ=255) aTTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAACCGGCTCTGGACTGGAAGAACACCCAGCTGTTCCGc > 1:18592/1‑138 (MQ=255) aTTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGcc > 3:93191/1‑139 (MQ=255) aTTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGc > 3:267736/1‑138 (MQ=255) aTTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGc > 2:158391/1‑138 (MQ=255) caccgcaccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGc > 8:259986/1‑138 (MQ=255) caccgcaccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGc > 6:350195/1‑138 (MQ=255) caccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGaa > 8:5283/1‑136 (MQ=255) caccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACag > 5:22485/1‑139 (MQ=255) caccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACag > 7:276894/1‑139 (MQ=255) caccgGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGAAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAAAAACCAGCTGTTCCGCCATGCGAAcct > 7:190571/1‑137 (MQ=255) caccgGCTTACGGCGTCGGGCAGTCCGAGGACAGGGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGAGTCTGTCACCGATCCCGGCTCTGGACTGGAAGAACACGCTCCTGTTCCGCCTTGCTaa > 8:364115/1‑136 (MQ=255) tcTTACGGCGTGGGGCAGTCCGAGTAATTTGTCGTAAAGGCAATCAAAGTGTACGGCAAAATAGCCCAGGTGTTTCTCGAAACTAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCga < 2:256815/138‑1 (MQ=255) tACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGaa > 5:287139/1‑139 (MQ=255) tCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTa > 1:256815/1‑137 (MQ=255) cGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAGCGAACACGGCTCTGGACTGGAGGCACAACCAGCTGTTCCGCCAGGCGACCAGAGCGCGATTTGTagag > 2:352515/1‑139 (MQ=255) cGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTagag > 1:57463/1‑139 (MQ=255) cGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGCACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTagag > 1:366612/1‑139 (MQ=255) tCCGAGGAAATTGTCGGATAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAACCGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGtgg > 6:388187/1‑137 (MQ=255) tCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGtt > 4:45292/1‑138 (MQ=255) tCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGAACAGGTGATTCTCGCAACGAAACCGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGtt > 5:368563/1‑138 (MQ=255) atcaatttGGCGCAAAGCCAAACAAAGAGAACGCAAAACGCCCCCAGGTGATGCCCCCAACTAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGaa < 1:82252/133‑1 (MQ=255) ggAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAAt > 5:226887/1‑139 (MQ=255) ttGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCttt > 5:251154/1‑139 (MQ=255) ttGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCttt > 4:4176/1‑139 (MQ=255) ttGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCttt > 2:21991/1‑139 (MQ=255) ttGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTGGAGAATTCttt > 5:245958/1‑139 (MQ=255) cgtacaGGCAATCAACGAGCACGGAAAAAGACACCCGGGGCTACGCCCAACCAACACGGCTCTGGACTGGCAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAg < 7:379053/134‑1 (MQ=255) aaTCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCa > 6:177507/1‑138 (MQ=255) aaGCGTACCCCAACAGAGACCAGGTCATTCTCCCAACTAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGa < 7:159926/139‑1 (MQ=255) aaGATTACGTCAAAAGATACCAGGTGATTCTCGCAACGAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGa < 8:80849/139‑1 (MQ=255) aaGAGTCCGCCAAAAGAGACCCGGTGTTGCTCCCAACTAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGa < 1:43214/139‑1 (MQ=255) agTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAACCAGACta > 4:168089/1‑139 (MQ=255) agTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACta > 5:288026/1‑139 (MQ=255) agTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACta > 7:80849/1‑139 (MQ=255) agTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGATCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACta > 7:309714/1‑139 (MQ=255) aCGGCAAAACCTACCTGTTTATTCCCGCAACCAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTatat < 6:226887/139‑1 (MQ=255) cgccAAAAGCCACCAGGTGATTCCCCCACCGAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATAtt < 8:191243/136‑1 (MQ=255) gcaaaaaGACACCCGGTGATTCTCGCAACGAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTg < 8:276894/136‑1 (MQ=255) aaGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCtt > 6:88018/1‑139 (MQ=255) gagaCCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTa > 7:391396/1‑139 (MQ=255) gaCCAGGTGATTCCCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATc < 4:148120/139‑1 (MQ=255) cctggTGATTCGCGCCACCAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAg < 4:29052/136‑1 (MQ=255) cccggTGATGCTCGCACCCAACACGGCGCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAg < 7:311122/136‑1 (MQ=255) ccAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAg < 8:391396/139‑1 (MQ=255) gtatgctcCCAACGAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAGGTGCa < 7:50394/134‑1 (MQ=255) cAACGAAGACGGCTCTTGACTTGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTTAGAATTCTTTGAAGCGTCTTCAAACAGACTATATTGATCTTTATCAGGTGCATTGGCCCGa < 6:368563/139‑1 (MQ=255) cAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAGGTGCATTGGCCCGa < 2:57463/139‑1 (MQ=255) aaaCGAACACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAGGTGCATTGGCCCGa < 2:366612/138‑1 (MQ=255) | TCCGCGCCGCTCTTGATCAGGGGATTACACTGATTGACACCGCACCGGCTTACGGCTTCGGGCAGTCCGAGGAAATTGTCGGAAAGGCAATCAAAGAGTACGGCAAAAGAGACCAGGTGATTCTCGCAACGAAAACGGCTCTGGACTGGAAGAACAACCAGCTGTTCCGCCATGCGAACAGAGCGAGAATTGTAGAGGAAGTTGAGAATTCTTTGAAGCGGCTTCAAACAGACTATATTGATCTTTATCAGGTGCATTGGCCCGA > CP006881/993417‑993681 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |