BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP006881	3,723,045	T→C	100%	intergenic (‑159/‑142)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,045	0	T	C	100.0%	414.2 / NA	110	intergenic (‑159/‑142)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (48/62); total (48/62)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 110 total aligned reads displayed.

AAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAA‑C‑T‑GTTT‑T‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGG  >  CP006881/3722916‑3723178

aaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCg                                                                                                                                   <  1:96503/139‑1 (MQ=255)

aaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCg                                                                                                                                   <  4:2229/139‑1 (MQ=255)

                 aaCGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑T‑Attt‑t                                                                                                              <  6:323548/139‑1 (MQ=255)

                           ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTaaa                                                                                                    <  7:308326/139‑1 (MQ=255)

                              cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAg                                                                                                 >  3:375671/1‑139 (MQ=255)

                              cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAg                                                                                                 >  1:62369/1‑139 (MQ=255)

                              cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAg                                                                                                 <  4:137231/139‑1 (MQ=255)

                              cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTACATCATAAATCATGATAGCGTTTTCGTCAA‑C‑A‑ATTTAT‑TTAGTTAAATat                                                                                                 >  2:299025/1‑138 (MQ=255)

                               acaGCGATCCTTTTTCATTTACGGAAATTTTAGGTCTTGCCTGCTTTACCAGTCAGAATCCCGCTTATTCAGATTATGAATACGCTTTCATCATATTTCTTGATAGCGTTTTCGTCAATT‑T‑TTTT‑T‑TTAGTTATATAGt                                                                                                >  6:52716/1‑139 (MQ=255)

                               acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAATTCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGt                                                                                                >  4:386238/1‑139 (MQ=255)

                               acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGt                                                                                                >  6:106837/1‑139 (MQ=255)

                               acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGt                                                                                                >  6:340675/1‑139 (MQ=255)

                               acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGt                                                                                                >  2:322719/1‑139 (MQ=255)

                                 aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGttt                                                                                              >  1:290878/1‑139 (MQ=255)

                                 aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGttt                                                                                              >  8:216725/1‑139 (MQ=255)

                                 aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGttt                                                                                              >  1:161262/1‑139 (MQ=255)

                                 aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAAGAGttt                                                                                              >  2:258321/1‑139 (MQ=255)

                                     aTCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATa                                                                                          >  2:113783/1‑139 (MQ=255)

                                      tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑CAA‑TTTT‑T‑TTAGTTAAATAGTTTTAtt                                                                                          >  4:751/1‑137 (MQ=255)

                                      tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATa                                                                                          >  1:118276/1‑138 (MQ=255)

                                      tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTAATCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTAGATa                                                                                          >  7:311743/1‑138 (MQ=255)

                                           tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAAcat                                                                                    >  1:266465/1‑137 (MQ=255)

                                           tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAAcat                                                                                    >  2:301837/1‑137 (MQ=255)

                                                  tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGAc                                                                              >  7:200836/1‑138 (MQ=255)

                                                             tAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTTAATAGTTTGATATAACATGTAGACAAAAATTCGTa                                                                   <  5:209580/138‑1 (MQ=255)

                                                                   ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaatt                                                             >  8:188307/1‑136 (MQ=255)

                                                                   ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaatt                                                             >  4:123997/1‑136 (MQ=255)

                                                                    tGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTa                                                            >  5:36391/1‑138 (MQ=255)

                                                                     gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                           <  5:358872/138‑2 (MQ=255)

                                                                     gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                           <  1:38016/138‑2 (MQ=255)

                                                                     gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                           <  3:113174/138‑2 (MQ=255)

                                                                         gccttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCCTCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTATGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgag                                                      <  1:310222/136‑3 (MQ=255)

                                                                          cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                      >  3:322837/1‑138 (MQ=255)

                                                                          cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTAAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCTTAAAaattaattttt                                                      >  6:203665/1‑135 (MQ=255)

                                                                            ttACCAGTCACAATCCCGCATATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                   <  6:111209/139‑1 (MQ=255)

                                                                             tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                   >  6:80981/1‑138 (MQ=255)

                                                                             tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                   <  1:322719/138‑1 (MQ=255)

                                                                             tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaa                                                    <  2:244126/137‑1 (MQ=255)

                                                                               ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  6:164974/138‑3 (MQ=255)

                                                                               ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  2:62369/138‑3 (MQ=255)

                                                                               ccAGGCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCCTGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  8:114369/138‑3 (MQ=255)

                                                                               acAGTCACAATCCCGCTTATTCAGATTAAGTATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  5:203665/137‑3 (MQ=255)

                                                                                   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATat                                                                                         >  4:197170/1‑93 (MQ=255)

                                                                                   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATat                                                                                         <  3:197170/94‑2 (MQ=255)

                                                                                   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  7:324468/134‑3 (MQ=255)

                                                                                   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                            <  5:16397/139‑1 (MQ=255)

                                                                                   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                            <  2:311336/139‑1 (MQ=255)

                                                                                    cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                            >  6:51058/1‑138 (MQ=255)

                                                                                        ctCCCGCTTAATCAGATAAAGAATACGCAATCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑A‑ATTT‑TATTAGATAAATACATTGATATAACATGTAGACAAAAAAACCTAAAAAATAATTGAGAAATACTTCACAata                                       <  5:52716/138‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTTACAata                                       <  7:52977/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  5:147425/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  3:283646/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  4:375671/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  4:325636/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  4:322837/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  3:751/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  8:117591/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  2:290878/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  2:266465/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  2:118276/139‑1 (MQ=255)

                                                                                        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  8:200836/139‑1 (MQ=255)

                                                                                         tCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                                      <  1:122526/139‑1 (MQ=255)

                                                                                           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                     <  6:36391/138‑1 (MQ=255)

                                                                                           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                     <  6:306642/138‑1 (MQ=255)

                                                                                           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                     <  5:340675/138‑1 (MQ=255)

                                                                                           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                     <  3:71655/138‑1 (MQ=255)

                                                                                           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                     <  3:123997/138‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  5:51058/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  7:10479/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  4:403030/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  3:67306/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  8:148125/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  2:161262/139‑1 (MQ=255)

                                                                                             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  1:301837/139‑1 (MQ=255)

                                                                                              cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATATTTTGATATAACATGTATACAAAAATTCTTAAAAATTAATTTTGAAATACTTCACAATATCGTGc                                 >  4:71655/1‑139 (MQ=255)

                                                                                              cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  3:49629/133‑1 (MQ=255)

                                                                                                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  >  8:22328/1‑135 (MQ=255)

                                                                                                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  3:268077/135‑1 (MQ=255)

                                                                                                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  >  4:268077/1‑135 (MQ=255)

                                                                                                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                  <  7:22328/135‑1 (MQ=255)

                                                                                                     aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                           <  5:80981/138‑1 (MQ=255)

                                                                                                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 <  5:126442/114‑3 (MQ=255)

                                                                                                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                 >  6:126442/1‑112 (MQ=255)

                                                                                                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                        >  8:203959/1‑139 (MQ=255)

                                                                                                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                        >  4:346224/1‑139 (MQ=255)

                                                                                                           agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       >  5:232646/1‑120 (MQ=255)

                                                                                                           agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  6:232646/120‑1 (MQ=255)

                                                                                                           agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       >  5:43148/1‑120 (MQ=255)

                                                                                                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       >  2:245310/1‑114 (MQ=255)

                                                                                                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  1:245310/114‑1 (MQ=255)

                                                                                                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                 <  5:175852/120‑1 (MQ=255)

                                                                                                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                 >  6:175852/1‑120 (MQ=255)

                                                                                                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt               >  1:298174/1‑138 (MQ=255)

                                                                                                                      tcatcaTAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                          >  5:233053/1‑106 (MQ=255)

                                                                                                                      tcatcaTAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                          <  6:233053/106‑1 (MQ=255)

                                                                                                                       catcatAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                  >  2:341585/1‑96 (MQ=255)

                                                                                                                       catcatAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       <  7:114544/108‑1 (MQ=255)

                                                                                                                       catcatAAATCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                       >  8:114544/1‑108 (MQ=255)

                                                                                                                              aaTCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg  >  2:61563/1‑138 (MQ=255)

                                                                                                                              aaTCATGATAGCGTTTTCGTCAA‑C‑TATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACGATGCTCAATCATGAAAGAAAGCAgg  >  6:25377/1‑138 (MQ=255)

AAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAA‑C‑T‑GTTT‑T‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGG  >  CP006881/3722916‑3723178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`