| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2228866 = | 126 (1.150) | 46 (0.430) | 25/246 | 1.9 | 42.6% | intergenic (‑118/‑88) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | CP006881 | 3304616 = | 1 (0.010) | intergenic (+4/+45) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT | |||||
AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP006881/2229006‑2228866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT > CP006881/3304616‑3304749 aggGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA < 6:375161/136‑1AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA < 4:168582/139‑1AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA < 7:357336/139‑1 GTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAA < 7:490181/139‑1 CTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA < 1:91403/108‑1 CTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTA > 2:91403/1‑108 tgtcaCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAA > 5:56882/6‑139 tgtcaCTGATAAATTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAA < 8:423554/134‑1 tcaCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACG < 3:350217/136‑1 tcaCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACG < 4:401092/136‑1 caaTGATAATTTAACTCACTTTCTAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACG < 3:329928/135‑1 aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA < 7:246601/138‑1 aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA > 1:143339/2‑139 aCTGATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTATATAGCTGTTATCTGTTTTTCCAAACTTCAGAGATGATTTCAAAgtaa > 7:92950/2‑135 ATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA < 1:250960/139‑1 ATAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA < 8:89306/139‑1 TAATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA < 1:390268/138‑1 ATTTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATT < 3:132598/138‑1 TTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAT > 5:342676/1‑117 TTAACACACTTTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAT < 6:342676/117‑1 acacttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGC < 7:384282/133‑1 acacttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGC < 5:104326/133‑1 ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGT > 7:189235/3‑139 ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACG > 4:285999/3‑123 ttTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACG < 3:285999/121‑1 tTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCTGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTT > 5:492407/2‑139 GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA < 3:420275/113‑1 GAGTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAA > 4:420275/1‑113 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTT > 5:20057/1‑139 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTT > 1:350134/1‑139 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTT > 1:28133/1‑139 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTT > 5:12125/1‑139 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGT > 7:316136/1‑121 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGT < 8:316136/121‑1 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGT < 1:57440/91‑1 GTGTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGT > 2:57440/1‑91 GTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCT < 8:60295/41‑1 GTCAACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCT > 7:60295/1‑41 AACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAG < 2:327260/139‑1 AACGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAG < 1:76488/139‑1 CGTGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTT < 8:66183/139‑1 TGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAA < 7:120781/125‑1 TGTATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAA > 8:120781/1‑125 TATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAC > 3:302221/1‑138 TATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA < 7:317316/104‑1 TATTGACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCA > 8:317316/1‑104 ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAA < 8:410034/138‑1 ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAA < 7:503410/118‑1 ACGCAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAA > 8:503410/1‑118 CAGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTC > 1:239919/1‑139 AGTAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCG > 7:25608/1‑139 TAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT > 2:13194/1‑138 AGTGGCTGTAAACCGTCGTTGCTCATTTTGTCTGAGACCAATACTCGAAACATCGTTAGATTTCCTCCTAAATTGACAAACTAAATATCTGATAATTTAACATATTCTCAAAAGAGTGTCAACGTGTATTGACGCAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP006881/2229006‑2228866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGT > CP006881/3304616‑3304749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |