| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 5,478 | 0 | G | A | 96.9% | 10535.4 / 29.4 | 4078 | intergenic (+747/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base G (83/19); major base A (1610/2159); minor base C (179/2); total (1893/2185) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 4080 total aligned reads displayed.
TCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTT > pSIJ663_pHT315_araE_xy/5340‑5613 | aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAt > 7:38657/1‑139 (MQ=255) cAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGaa > 6:323252/1‑138 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGCGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc > 7:178310/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTTTGTTGGGAGTCACGGGGGCGGAGCCGATGGAAAAACGCCCGCACcgc > 8:118797/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTTTGTAGCTCGTGAGGGGGTGGAAGCGATTTGATAAAAGCCAGCAAcgc > 4:204138/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATTCGCGTCATGGGGGCGCAGCCTATGGAAAAACGCCAGCAAcgc > 1:150100/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTAAGGGGGGCGAAGCCTATTGAAAAAAGACAGCAAagc > 4:53500/1‑139 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GAGTTTTGTGATGCTCGTCAGGGGGGCGCAGCCGATGGAAAAACGCCAGCAAcgg > 3:107855/1‑138 (MQ=255) gagCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg < 1:7728/139‑1 (MQ=255) gagCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGGGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg < 3:68428/139‑1 (MQ=255) agCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATTGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑TTTTTTTGTGATGCTGGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg < 6:173652/138‑1 (MQ=255) agCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTGCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGc < 5:335573/139‑1 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAACCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGGTGGTCGGCAGGGGGGGGGCGCCGTTGGAAAAACCCCACCAACCCGGCCt > 3:178968/1‑139 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGGTGGTGGTGAGGGGGGGGCAGCCTAAGGAAAAACCCCAGCCAcgccggcg > 5:198832/1‑134 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCgg > 1:202412/1‑136 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCGATGGAAAAACGCCCGCAACGCGGCCt > 4:326385/1‑139 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GAGTTTTTTGATGCTGGTGAGGGGGGCGAAGCCGATGGAAAAACGCCAGCCACCCGGccg > 1:308040/1‑138 (MQ=255) gAGGGAGCTTCCCGGGGGAAACGCCTTGTATCTTTATAGGCCTGTCGGGGGTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa < 7:246265/139‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GTTTTTTGTGATGCTCGTCTGGGGGGCGAAGCCTATGGAAAAACGCCATCAACGCGGCCTTTTTa < 5:125802/139‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa > 8:57279/1‑139 (MQ=255) aGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTAc < 2:23933/139‑1 (MQ=255) cTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTG‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGTAAAAACGCCAGCAACGCGGCCTTTTTACGGTTcc < 2:295833/139‑1 (MQ=255) cTTCCAGGGGGAAACGCCTGGTATCTTTATAGGCCTGTCGGGTTTCGCCACCTCTGACTTGCGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTcc < 5:169834/139‑1 (MQ=255) ggAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑tggcctttt > 5:145258/1‑139 (MQ=255) ggAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACCCCAGCAACGCGGCCATTTTACGGTTCc‑tggccgttt > 4:74141/1‑139 (MQ=255) aaaCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑tggccttttgc > 7:98040/1‑139 (MQ=255) aCGCCTGGTATCTTTATAGGCCTGGCGGGTTTCGCCACCTCTGACTTGAGCGGC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGGTCc‑tggccttttgctg < 1:282362/139‑1 (MQ=255) ggTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑tggccttttgctggccttt > 6:299406/1‑139 (MQ=255) tATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑tggccttttgctggccttttg < 6:40701/139‑1 (MQ=255) cTTTATCGGCCTGTCGGGTTTCGCCACCTCTGACGTGAGGTGC‑GTGTTGTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAACACGCAAGCAACTCGGCCTTTTTACGGTTCC‑Tggccttttgctggccttttgct < 4:178440/138‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCAC < 7:198670‑M1/138‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCAC < 8:237934‑M1/138‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACA > 3:151980‑M1/1‑139 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTATGACTTGAGCGTC‑GATTTTTTTGATGCGAGTAAAGGGGGCGAACACAATAGAAAAACCCCAGCAACCCGGCCGTTATACGGTTCCATGCCGTTTTGAT‑GCCATTTGCTcaa > 8:140660/1‑137 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCGCTGACTTGAGCGTC‑GATTTTTGTGTTGCACGTCAGGGGGGCGCAGCCTATGGAAAAACCCCAGCCACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTTCTCACA > 2:53620‑M1/1‑139 (MQ=255) taGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTGGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATG < 2:267415‑M1/139‑1 (MQ=255) aGTCCTGTCGGGTTTCGCCACCACTGACTTGAGCGTC‑GAGTTTTGTTATGCTAGTCAGGGGGGCGAAGCCATTGGAAAAACCACAGCAACGCGGCCTTTTTAAGGTTAC‑TGGCCTTTTTCGGGCCGTTTTCGCACAttt > 2:82571/1‑137 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGGGTTTTTTTTTTGGGCGGAAGGGGGGGGAAGCCCATTGAAAAACCCCCCCACCCCGGCCGTTTTAAGGGTCA‑CGGCCTTTTTAGGGCGGTTTGGTAACATGt > 2:325305/1‑139 (MQ=255) tCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 7:55595/138‑1 (MQ=255) tCCTGGCGGGTTTCGCCACCTCTGACTTGCGCGGC‑GATTTTTGTTATGCTCGTCTGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 3:29998/138‑1 (MQ=255) cTGTCGGGTTTCGCCACCTCTGCCTTGAGCGTC‑GATTTTTGTGATGCTGGGCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGGTCtt > 1:232473/1‑139 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑t > 1:180385/1‑106 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTTTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc > 6:93011/1‑87 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGTAGCCTATGGAAAAACGCCAGCCACGCGGCCGTTTTACGGTTCC‑TGGCCTTTTGGTTGGCTTTTGCGCACATGTTcgt > 6:242322/1‑136 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCttt > 5:226597/1‑139 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCttt > 1:1012/1‑139 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTAACATGTTCttt > 4:108545/1‑139 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCGTTTGCTCACACGTTCtt > 5:99423/1‑138 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTAAGGGGGGCGAACCCTATGGAAAAACGCCCGCCACCCCGCCGTTTTACGGTTCC‑GGGCCTTTTGCGTGCCGTTTTCGCACAAGTTGttt > 8:189015/1‑139 (MQ=255) tGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTAGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCttt > 3:325449/1‑139 (MQ=255) gTCGGGTTGCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCCGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTc < 3:196152/139‑1 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTTTGATGCTCGTCAGGGGGGCGCAGCCAATGGAAAAACCCCCCCAACCCCGCCGTTTTAACGTTAC‑AGGCCATTTTCTGGCCTTTTTGTCACATGTTCtttac > 6:6638/1‑137 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTTTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTcc > 2:208744/1‑139 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGTTGCTCGTCAGGGGGGCGAAGCCTTTGGAAAAACGCCAGCAACGCGGCCGGTTTACGGTTCC‑GGGCCGTTTGCTGGCCGTTTGCTGACCTGTTCtttgc > 5:243555/1‑137 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATTCTCGTCATGGGGGCGAAGCCGATGGAAAAACCCCAGCAACGCCGCCGTTTTAAGGGTGC‑TGGCCGTTTGCTGGCCTTTTGCTACCATGTTCTTTc > 8:286481/1‑138 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCc‑tggcc < 8:166159/107‑1 (MQ=255) tCGGGGTTCGCCACCTCTGACTTGAGCGTC‑GTTTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTc < 2:162906/138‑1 (MQ=255) cGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCt < 4:127069/139‑1 (MQ=255) tttCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCGTTTTCTCACATGTTCTTTCCTTCGt > 4:154569/1‑139 (MQ=255) tCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCGTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGttt > 6:150741/1‑138 (MQ=255) cGCCACCTCTGACTTGCGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 5:10089/138‑1 (MQ=255) cGCCACCTCTGACTTGAGGGTC‑GTTTTTTGTGATGCTCGGCAGGGGGGCTAAGCATAGGTAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 1:124435/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 6:125686/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 1:251986/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 7:27325/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 3:278528/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 7:220070/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 4:279347/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 4:300905/138‑1 (MQ=255) acggctGACTTGAGCGGC‑TTTTTGTGGGTGGCTGGGGCGGGGGGCTAAGCCTATGCAAACACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATcccc < 6:202242/135‑1 (MQ=255) aCCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTgcggcggggcttggcggct < 2:10403‑M1/139‑20 (MQ=255) aCCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATcccc < 7:31747/139‑1 (MQ=255) aCTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTAc < 8:332801/77‑1 (MQ=255) aCTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 8:80457/137‑1 (MQ=255) aCTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 4:255853/137‑1 (MQ=255) aCTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCt > 7:112120/1‑139 (MQ=255) aGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCt < 3:126683/128‑1 (MQ=255) aGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCtgtg > 5:58169/1‑137 (MQ=255) aGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGa > 8:264777/1‑139 (MQ=255) aGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGa > 5:296671/1‑139 (MQ=255) aGCGTC‑GATTTTTGTGATGCTCGGCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACCTGTTCTTTCCTGCGTTTTCCCCGGCTTCTGTGGa > 5:269559/1‑139 (MQ=255) gcggc‑gATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTGTTTACGGGTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 8:31033/139‑1 (MQ=255) gCGTG‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTATTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTGCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:80929/139‑1 (MQ=255) gCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 3:87874/139‑1 (MQ=255) gCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 1:34616/139‑1 (MQ=255) gCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 1:53957/139‑1 (MQ=255) gCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 4:231275/139‑1 (MQ=255) gCGTC‑GATTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 3:259221/139‑1 (MQ=255) cGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGGTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 2:185265/138‑1 (MQ=255) c‑GATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:159141/135‑1 (MQ=255) tgtgATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 8:212098/138‑1 (MQ=255) gtgAGGCTCGTCCGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAc < 6:270107/138‑1 (MQ=255) tCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagt < 3:238192/139‑1 (MQ=255) aGGGGGGCGAAGACTATGTAAACACGCCAGCTACGAGTCCTTTTTACGTTTCC‑TGGCCTTTTGATGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtg < 3:44572/138‑1 (MQ=255) ggggggCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 2:126044/139‑1 (MQ=255) ggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 7:139817/139‑1 (MQ=255) ggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 5:78918/139‑1 (MQ=255) gggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 7:294180/80‑1 (MQ=255) gggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTg > 3:217776/1‑139 (MQ=255) ggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTa > 5:320779/1‑41 (MQ=255) | TCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTC‑GATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC‑TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTT > pSIJ663_pHT315_araE_xy/5340‑5613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |