| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 8,799 | A→C | 5.5% | intergenic (+4068/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 8,799 | 0 | A | C | 5.5% | 7016.5 / 60.2 | 2437 | intergenic (+4068/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base A (1178/1058); new base C (21/163); total (1203/1234) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.01e-30 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 2506 total aligned reads displayed.
AAACTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGTTGCCGC > pSIJ663_pHT315_araE_xy/8662‑8937 | aaaCTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 1:145503/139‑1 (MQ=255)aaaCTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 3:163824/139‑1 (MQ=255)aaaCTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 3:324928/139‑1 (MQ=255)aaaCTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 4:259913/139‑1 (MQ=255) tttCCGGAACCCATAGACCGGCGCGGCATCGTAATCATATTGATGCTTGGTCGGTTCTTGCGGTTGCGGTGCGATAAGCAACGGGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGcc < 8:290224/138‑1 (MQ=255) tttCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGcc < 4:231252/138‑1 (MQ=255) ttCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGcc > 2:227749/1‑137 (MQ=255) cAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAgt < 1:307585/139‑1 (MQ=255) cAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAg < 4:111404/138‑1 (MQ=255) cAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAg < 2:11238/138‑1 (MQ=255) gCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCCGCTGCATAAA‑GCGGCCCAGTTGTTCa < 7:97345/139‑1 (MQ=255) gCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCa < 2:323829/139‑1 (MQ=255) gCCATAGACCGTCGAGGCTTCGTAATCATATTGCTGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGAAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCa < 8:175192/139‑1 (MQ=255) ccATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGACACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCAc > 1:88858/1‑139 (MQ=255) cATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACg < 4:281379/139‑1 (MQ=255) gcccGGCGCGGCTTCGTAATCATATTGATGTTTGGGCGGTTCTTGCGGTTTCGGTTCCATACGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTcc < 4:179066/137‑1 (MQ=255) gACCGGCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTc < 4:95242/138‑1 (MQ=255) ccGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g > 7:315233/1‑116 (MQ=255) ccGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g > 3:105990/1‑116 (MQ=255) ggcgcgGCATCGTAATCCTATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATGTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGAc < 2:177241/137‑1 (MQ=255) gTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCCCCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGAc > 5:179745/1‑139 (MQ=255) gTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGAc > 2:28614/1‑139 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 1:210022/113‑1 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g > 1:167150/1‑113 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 8:31067/1‑139 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 6:240871/1‑139 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 8:38136/1‑139 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 7:38481/1‑139 (MQ=255) tCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCCGCATAAA‑GCGGCCCACTTGTTCACGCTCCTGACg > 3:310106/1‑139 (MQ=255) cgcgGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 1:50440/1‑138 (MQ=255) cgcgGCATCGTAATCATATTGATGTTAGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGAGCCATGGAAACCGATATTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACg > 7:128291/1‑138 (MQ=255) ggaTCGTAATCATTTTGATGTTTGGTCGTTTCTTGCTGTTTCGTTTCGATAATCAACGTGCCCTGTAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 3:130295/137‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 5:292235/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 3:229781/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 5:162524/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 7:101140/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 2:14553/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 3:90498/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCACTGGAATCCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 5:259243/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGATTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 5:330193/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGGCTGTTCTTGCGGTTGCGGTTCGATAAGCAACGGGCCCTGGAAACGGATTTTATGTTTATGCTCAACCCCCATCTGCATAAC‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 6:298326/139‑1 (MQ=255) gCATCGTAATCATATTGATGTTTGGGCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 2:49463/139‑1 (MQ=255) gCATCGTAATCATATTGATGTGTGGTCGGTTCTTGCGGTGTCGGTTCGATAAGCACCGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 7:209302/139‑1 (MQ=255) gCATCGTAATCAAATTGTTGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATTCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 4:135509/139‑1 (MQ=255) aTCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg < 3:74455/139‑1 (MQ=255) aTCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCGCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg < 3:260787/139‑1 (MQ=255) aTCGTAATCATATTGATGTTTGGTCGGTTCGTGCGGTTTCGGTTAGATAAGCAACGTGCCCTGGAACCCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg < 6:332725/139‑1 (MQ=255) aTCGTAAGCATCTTGATGGTTGGTCGGGTCTTGCGGTGTCGGGTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg < 8:241459/139‑1 (MQ=255) gTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTa < 3:283433/139‑1 (MQ=255) tAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 4:325324/102‑1 (MQ=255) atatTGATGTGTGGTCGGTTCTTGCGGTTTCGGTTCGAAAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCGCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑aa < 8:119008/138‑1 (MQ=255) atTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGCCGCAAGTCGGTATTT‑AACAg > 6:73100/1‑139 (MQ=255) ttGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑TACAGc < 3:152025/139‑1 (MQ=255) aTGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g < 1:334333/91‑1 (MQ=255) aTGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg > 8:262771/1‑124 (MQ=255) gTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTc > 5:116765/1‑139 (MQ=255) tGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg > 3:204849/1‑119 (MQ=255) tGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGc < 4:198185/131‑1 (MQ=255) tGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGt > 1:100142/1‑138 (MQ=255) ggTGGGTTCTGGCGGTTTCGTTTCGATAAGCAACGTGCCATTGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTa < 8:216528/138‑1 (MQ=255) ggTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTaa > 1:232285/1‑139 (MQ=255) ggTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTaa > 5:133004/1‑139 (MQ=255) gTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGcc > 1:195135/1‑89 (MQ=255) gTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑c > 1:251726/1‑139 (MQ=255) gTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTcc < 7:268696/101‑1 (MQ=255) gCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTA‑AACAGCGTTTCGTAA‑CCTTCACGAc < 8:54825/138‑1 (MQ=255) ttCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg < 4:156905/102‑1 (MQ=255) ttCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGcccc > 6:102273/1‑139 (MQ=255) ttCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGccc > 6:12418/1‑138 (MQ=255) ttCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCAGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCg < 7:149187/115‑1 (MQ=255) tcgTTCCATAAGAACCGTGCCCTTCAAACGTATTTTTTGTTTAGCTTCACCCACCATCTCAATAAC‑GCGGCCCAGTTGTTCACGGCCTTGCCCCATGTCGTTATTT‑AACCG‑GTTTGCTAACCCTACACGACCGCCCca < 2:70508/136‑1 (MQ=255) gggTCCGAAAACCAAGGGGCCGTGGAAACCTATTTTATTTTTATGCACAACCACCTTCT‑CATAAACGGGGCCCATTTTTACACGCTCGTGACGCAAGGC‑GTATTTAAACAGCTTTTCTTAA‑CCTTCACGACCGCCCca < 4:308104/137‑1 (MQ=255) cGGTTCTATACGCAACGTGCCCTGCAAACCGATTTTATGTTTATGCTCACCCCCCATCTCCAAAAA‑GCGGCCCAGTTGTTCACGCTCCTGCCGCAAGTGGGTATTA‑AACCGCGTTTCGAAA‑CCTTCACGACCGCCCca < 7:77437/138‑1 (MQ=255) aTAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑g > 1:7287/1‑60 (MQ=255) aTAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGCCGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACa > 2:205121/1‑138 (MQ=255) aTAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 6:214279/91‑1 (MQ=255) aaCGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt > 4:54218/1‑85 (MQ=255) tGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTACTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCAcc > 5:78958/1‑139 (MQ=255) gCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCa < 7:19475/64‑1 (MQ=255) gCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAg < 2:256836/93‑1 (MQ=255) ccgggAACCCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCTGTTGTTCCCGCTCCTGCCGCAAGTCGGTTTTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGcc < 7:224343/136‑1 (MQ=255) tGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCa < 8:14613/60‑1 (MQ=255) gAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 7:168142/74‑1 (MQ=255) aaCCTATTTTATTTTTATCCACAACAACCATCTCCATAAA‑GCGGCCCAGTTGTACACGCCCCTGACGAAAGTCGGTATTA‑AACAGCGTTTCGTAA‑CATTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAAttt < 7:294432/139‑1 (MQ=255) ttttATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt > 7:242156/1‑66 (MQ=255) ttttATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGt > 3:47094/1‑139 (MQ=255) tatgCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCAt > 1:120894/1‑139 (MQ=255) atgCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGCCCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATc > 1:274778/1‑139 (MQ=255) atgCACAACCCCCTTCTCCATAAC‑GCGGCCCCGTGGTCCACGCACCTGACGCAAGTCGGTATTA‑AACAGCGTTTCGAAC‑CCTCCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCAt < 6:184512/138‑1 (MQ=255) tccTCACCCCCCATCTTCATAAC‑GGGGCGCAGTTGATCAGCCACCTGCCTCAAGTCGTTTTAT‑AACCGCGTTTCGTAA‑CCTGCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCg < 6:164625/137‑1 (MQ=255) cacAACCACACTCTGCATAAC‑GCGGCCCTGTGGTGCACGCTCCTGACTCACGTCGGTTTTT‑AACAGCGTTTCTTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCg < 6:27100/135‑1 (MQ=255) cTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCAt < 8:81712/135‑1 (MQ=255) cAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGt < 2:87908/51‑1 (MQ=255) aacccaccaACTGCAAAAC‑GCGGCCCAGTTGTACCCCCCCCTGACGCAAGGCGGTATTT‑AACAGCGTTTCGAAA‑CATTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGt < 6:143020/136‑1 (MQ=255) accaccATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTaa > 5:232777/1‑139 (MQ=255) cATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCg > 8:197335/1‑40 (MQ=255) cATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGtt > 5:45172/1‑139 (MQ=255) cATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGtt > 5:205643/1‑139 (MQ=255) a‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCTATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGTTgccgc > 3:185864/1‑139 (MQ=255) a‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGTTgccgc > 7:59434/1‑139 (MQ=255) | AAACTGTTTCAGGAAGCCATAGACCGTCGCGGCATCGTAATCATATTGATGTTTGGTCGGTTCTTGCGGTTTCGGTTCGATAAGCAACGTGCCCTGGAAACCGATTTTATGTTTATGCTCAACCACCATCTGCATAAA‑GCGGCCCAGTTGTTCACGCTCCTGACGCAAGTCGGTATTT‑AACAGCGTTTCGTAA‑CCTTCACGACCGCCCCACAGGACATAGTTTTCACCGCCCAATTTATGGGTTGCTTCCATCGCTGTAACAACTTGCGTTGCCGC > pSIJ663_pHT315_araE_xy/8662‑8937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |