Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 2,610,027 C→A 6.1% intergenic (‑206/+45) U712_13430 ← / ← U712_13435 Transcription elongation factor greA/Uridine kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,610,0270CA 6.1% 236.8 / 4.3 75intergenic (‑206/+45)U712_13430/U712_13435Transcription elongation factor greA/Uridine kinase
Reads supporting (aligned to +/- strand):  ref base C (38/31);  new base A (3/2);  total (42/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-01

ACAAGAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCGGGATAATAATA  >  CP006881/2609889‑2610165
                                                                                                                                          |                                                                                                                                          
aCAAGAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGc                                                                                                                                            <  3:194562/139‑1 (MQ=255)
 cAAGAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGcc                                                                                                                                           <  7:48518/139‑1 (MQ=255)
  aaGAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCt                                                                                                                                          <  3:146161/139‑1 (MQ=255)
    gAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCta                                                                                                                                         >  6:264137/1‑138 (MQ=255)
                agacaggTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGt                                                                                                                            <  1:171667/133‑1 (MQ=255)
                aGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGt                                                                                                                            >  1:22412/1‑139 (MQ=255)
                aGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGt                                                                                                                            <  5:121775/139‑1 (MQ=255)
                aGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGt                                                                                                                            >  5:123670/1‑139 (MQ=255)
                aGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGt                                                                                                                            <  2:106800/139‑1 (MQ=255)
                  ggCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCa                                                                                                                          >  6:312971/1‑139 (MQ=255)
                  ggCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCa                                                                                                                          <  5:55738/139‑1 (MQ=255)
                     aGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGc                                                                                                                                            <  7:290911/118‑1 (MQ=255)
                     aGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGc                                                                                                                                            >  8:290911/1‑118 (MQ=255)
                     aGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTATGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATTGTCagag                                                                                                                       >  8:154378/1‑139 (MQ=255)
                      gTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGt                                                                                                                      <  2:22412/139‑1 (MQ=255)
                       tCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCCCATTCCCTTCCTGCCTATACATAATATGGTCAGAGt                                                                                                                      >  3:189542/1‑138 (MQ=255)
                       tCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGt                                                                                                                      >  3:267488/1‑138 (MQ=255)
                            gTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGttatt                                                                                                                  <  5:264137/137‑1 (MQ=255)
                                 tctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCTCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCGGCCTAGACATAATATGGTCAGAGTTATTTATGTc                                                                                                            >  7:264084/1‑138 (MQ=255)
                                 tctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGtg                                                                                                            >  2:298813/1‑137 (MQ=255)
                                  ctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCt                                                                                                                                          >  6:69633/1‑107 (MQ=255)
                                  ctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCt                                                                                                                                          <  5:69633/107‑1 (MQ=255)
                                  ctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             <  1:169085/136‑1 (MQ=255)
                                  ctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             <  5:312971/136‑1 (MQ=255)
                                  ctctcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTc                                                                                                            <  4:267488/137‑1 (MQ=255)
                                     tcCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTcta                                                                                                          <  7:154378/136‑1 (MQ=255)
                                       ccATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTctatgcta                                                                                                     >  3:188739/1‑139 (MQ=255)
                                          tataGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCTCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATgg                                                                                                  <  3:159069/139‑1 (MQ=255)
                                          tataGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATgg                                                                                                  <  8:121319/139‑1 (MQ=255)
                                          tataGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATgg                                                                                                  >  6:164207/1‑139 (MQ=255)
                                               gTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTctatgc                                                                                                       >  1:235299/1‑129 (MQ=255)
                                               gTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTctatgc                                                                                                       <  2:235299/129‑1 (MQ=255)
                                               gTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGttatta                                                                                             >  8:148078/1‑139 (MQ=255)
                                                tACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTc                                                                                                            >  3:161790/1‑123 (MQ=255)
                                                tACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTc                                                                                                            <  4:161790/123‑1 (MQ=255)
                                                 aCTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACCTTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTAc                                                                                            >  2:35509/1‑138 (MQ=255)
                                                 aCTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGttatt                                                                                                                  >  1:114303/1‑116 (MQ=255)
                                                 aCTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGttatt                                                                                                                  <  2:114303/116‑1 (MQ=255)
                                                 aCTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGTTATTAc                                                                                            >  6:238176/1‑138 (MQ=255)
                                                 aCTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTAc                                                                                            >  2:295706/1‑138 (MQ=255)
                                                 aCTGGTTATCTTAAACTGAATCGGGTCGTTGTGCAAATATTTGGCGTTTATTAACAGGGAAAGAAGGGAATTAGCACATTGCCTTCCGGGCGATACATAATATGGTCAGAGTTTTTTATGTGTTTGGTATgggttttc                                                                                            >  6:144924/1‑132 (MQ=255)
                                                   tGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACaa                                                                                          >  2:127639/1‑138 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAAt                                                                                       >  5:148697/1‑139 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAAt                                                                                       >  1:94209/1‑139 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAAt                                                                                       >  2:47136/1‑139 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAAt                                                                                       >  8:76242/1‑139 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGACt                                                                                                                                          >  7:20819/1‑88 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGACt                                                                                                                                          >  7:16021/1‑88 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGACt                                                                                                                                          <  8:16021/88‑1 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGACt                                                                                                                                          <  8:20819/88‑1 (MQ=255)
                                                     tttATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGACTATACATAATATCGTCAGAGTAATTTATGTCTATGCTATGGTATTACAAAAt                                                                                       >  5:290805/1‑139 (MQ=255)
                                                               aCTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCt                                                                                                                                          <  1:212415/78‑1 (MQ=255)
                                                               aCTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGt                                                                             >  4:125115/1‑139 (MQ=255)
                                                               aCTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGAACATTCCCTTCCTGCCt                                                                                                                                          >  2:212415/1‑78 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCag                                                                                                                         <  8:93418/91‑1 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCag                                                                                                                         >  7:93418/1‑91 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             >  3:329383/1‑103 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             <  4:329383/103‑1 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             >  3:161661/1‑103 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGt                                                                                                             <  4:161661/103‑1 (MQ=255)
                                                                   aaTCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTc                                                                           >  6:31103/1‑137 (MQ=255)
                                                                        tgtCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATg                                                                    >  3:331529/1‑139 (MQ=255)
                                                                             ttCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGttt                                                                >  5:149122/1‑138 (MQ=255)
                                                                                          tCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGAc                                                   >  2:212476/1‑138 (MQ=255)
                                                                                                 tataAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGAGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGa                                            >  6:182653/1‑138 (MQ=255)
                                                                                                          ggAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGttatt                                                                                                                  <  8:196080/59‑1 (MQ=255)
                                                                                                          ggAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGttatt                                                                                                                  >  7:196080/1‑59 (MQ=255)
                                                                                                          ggAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGa                                  >  5:188926/1‑139 (MQ=255)
                                                                                                           gAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGAc                                 <  1:295706/139‑1 (MQ=255)
                                                                                                           gAAAGAAGGGAAATCGCACATTCCCTTCCTGCCTAAACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGAc                                 <  3:190932/139‑1 (MQ=255)
                                                                                                            aaaGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGCGACCATCAGATCAATTGCGACg                                <  6:149122/139‑1 (MQ=255)
                                                                                                                    gAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTGTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCt                         >  8:113987/1‑138 (MQ=255)
                                                                                                                          gCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGcc                  >  5:269739/1‑139 (MQ=255)
                                                                                                                            acaTTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCtt                <  7:76242/139‑1 (MQ=255)
                                                                                                                             caTTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTc               <  6:148697/139‑1 (MQ=255)
                                                                                                                             caTTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTc               <  8:44794/139‑1 (MQ=255)
                                                                                                                                  ccTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCggg           <  4:193926/138‑1 (MQ=255)
                                                                                                                                   cTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCGGGat         <  5:232934/139‑1 (MQ=255)
                                                                                                                                   cTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCGGGat         <  6:290805/139‑1 (MQ=255)
                                                                                                                                          ccTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTtgtg                                                     >  2:124060/1‑88 (MQ=255)
                                                                                                                                          ccTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTtgtg                                                     <  1:124060/88‑1 (MQ=255)
                                                                                                                                          ccTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCGGGataataata  >  1:224706/1‑139 (MQ=255)
                                                                                                                                          |                                                                                                                                          
ACAAGAATGAGAACACAGGGCAGTCCTCGTTCTTCTCTCCCATATAGGTACTGTTTATCTTAAACTGAATCGTGTCGTTCTGCAAATATTTCGCGTTTATAAACAGGGAAAGAAGGGAATTCGCACATTCCCTTCCTGCCTATACATAATATGGTCAGAGTTATTTATGTCTATGCTATGGTATTACAAAATCGCGTTTTGTTCAAGAATGGTTTGAATTTTTGTGACCATCAGATCAATTGCGACGTGATTCTGACCGCCTTCCGGGATAATAATA  >  CP006881/2609889‑2610165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑