| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,571,567 | T→C | 8.6% | S14G (AGC→GGC) | U712_18320 ← | putative allantoin permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,571,567 | 0 | T | C | 8.6% | 252.6 / 11.4 | 93 | S14G (AGC→GGC) | U712_18320 | putative allantoin permease |
| Reads supporting (aligned to +/- strand): ref base T (42/43); new base C (6/2); total (48/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGAAAGGCCGATCGCAATTAATCCTCCCACGGTCGCGTAGGTCGGTATGTTATGTATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAACA > CP006881/3571429‑3571703 | gCGAAAGGCCGATCGCAATTAATCCTCCCACGGTCGCGTAGGTCGGTATGTTATGTATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCACAGGCACCAGATCTTCATTGCt < 7:69260/139‑1 (MQ=255)gCGAAAGGCCGATCGCAATTAATCCTCCCACGGTCGCGTAGGTCGGTATGTTATGTATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCt < 5:225151/139‑1 (MQ=255) aaTCCTCCCACGGTCGCGTAGGTCGGTATGTTATGTATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATtgctgc < 2:73859/138‑1 (MQ=255) tatgttatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGc > 6:222984/1‑139 (MQ=255) ttatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCACAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 8:53413/138‑1 (MQ=255) ttatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 1:92590/138‑1 (MQ=255) ttatgtATACAACCCATCCAAATGGAGGCAAAGTGCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 5:27493/138‑1 (MQ=255) tatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcccc > 6:146110/1‑139 (MQ=255) tatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCACAAAGGCACCACATCTTCATTGATCAGCCTGTTGGCTTTCTGCTGACTCGCTTTTAATTTCATAGACGGCTccc > 6:16876/1‑138 (MQ=255) tatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTACCAAAGGCACCAGATCTTCATTGCTCATCCTGGTGGTTTGCTGCTGACTCTCTTTTAATTTCATAGCAGGCTccc > 6:27493/1‑138 (MQ=255) tatgtATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTACTGTCCCAAAGGCAACAGATCTTCATTGCTCAGCCTGTATGATTTCTGCTGACTCTATTTTAATTTCATATCCGGCTacc > 6:204087/1‑138 (MQ=255) tatgtATACATCCCATCCAAATGGAGGCAAAGTTCAATGCTTTCCACGTCCGT‑TTTTGCTGTACCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTGACTTTTAATTTCATAGCAGGCTcccc > 2:144436/1‑139 (MQ=255) tataCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAATGCACCAGATCTTAATTTCCCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGTCTCCCCTTTc > 5:152545/1‑139 (MQ=255) tataCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCttt < 4:304350/138‑1 (MQ=255) tataCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTc > 8:299583/1‑139 (MQ=255) ataCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTc > 8:43418/1‑138 (MQ=255) ataCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGAGGTTCATTGCCCCGCCTGTTGGCTTGCTGCTGACGATCGTTTAATTTCATATCCGGCTccccagtcc > 6:4429/1‑134 (MQ=255) ataCATCACATCCAAATCGACGAAAAGATAATTGCTTTCCACGTCCGT‑TTTTCCTGTACCAAAGTAACCAAAACTACAAACCTCAAACAGTTGGATTGCTGCAGCCTCACTTTAAATTTCATAGCCGGCTCCCGTTTc > 4:296868/1‑138 (MQ=255) aCATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCa > 6:80363/1‑138 (MQ=255) catcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGTATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 7:308292/139‑1 (MQ=255) catcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 5:79996/139‑1 (MQ=255) catcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 1:144436/139‑1 (MQ=255) catcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACATGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 7:164967/139‑1 (MQ=255) catcccatccAAATGGAGGCAAAGGGCATTGCTTTCCACGTCCGT‑TTATCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 2:95026/139‑1 (MQ=255) catcccaaccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCAAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 2:270695/139‑1 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCt > 4:94248/1‑126 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCt < 3:94248/126‑1 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCatat > 3:98607/1‑139 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCatat > 2:18997/1‑139 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCatat > 3:22981/1‑139 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCGGTTGGATTGCTGCTGACTCTCTTTTTATTTAATAGCCGGCTCCCCGTTCCatat > 4:7701/1‑139 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCCCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 2:191617/138‑1 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCCCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata > 1:191617/1‑138 (MQ=255) atcccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCGTCATTGCTCAGCCTGTTGGATTGCTGCTGACTAGCGTTTAATTTCATAGCAGGAGCCCCTTTCCatat > 8:103604/1‑139 (MQ=255) ataccatccAAATGGAGGCAAAGTTAATTGCTTTCCACGTCCGT‑GTTTCCTGTCACAAAGGCAACAGATATTCATTGCCGAGCCTGATGGATTGGTGCTGGCTCTATTTTTATTTCATAGACGGCTCCCATTTCCatat > 4:115120/4‑139 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 7:266465/136‑1 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 3:154486/136‑1 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata > 4:154486/1‑136 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata > 8:266465/1‑136 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCCCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTg > 8:171610/1‑139 (MQ=255) cccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCACAAAGGCACCAGATCTTCATTGATCAGCCTGTTGGATTGCTTCTGGCTCTCTTTTATTTTCATTGCAGGCTACACTTTCCATAttt > 8:164967/1‑138 (MQ=255) ccatccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGt > 8:88383/1‑139 (MQ=255) ccatccAAATGGAGGCAAAGTTCATTGCTATCCACGTCCGTGTTTACATGACCCAAGGGCACCCGAAGTTAATTGGTCCGCCGGTTGGTTTGCTGGTGCGGTGGTTTTATTTTCATCGCCGGACCACCTTGCAATAttt > 2:20155/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCa < 8:202066/76‑1 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTTCTGCTGACTCTCTTTTAATTTCATATCCGGCACCCCGTTCCAAATTTTc > 6:210579/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 4:25550/123‑1 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 3:23627/123‑1 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc > 3:25550/1‑123 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc > 4:23627/1‑123 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTc > 6:288125/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCATCATTGCTCAGCCTGTTGGATTGCTTCTGACTCTATTTTAATTTCATAGCCGGCTCCCCTTTCCAAAATGTc > 8:308292/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCACATCTTCATTGCTCAGCCAGTTGGATTGCTGCTGACTCTCTTTTAATTTCATATCCGGCGCCCCGTTACATAtttact > 1:245119/1‑135 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACAAGATCTTCATTGACCAGCCTGTTGGATTGATGCTGACTCTCTTTTAATTTCATATACGGCTCCCCTTTCCATAATGTc > 4:85829/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑GTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTTATGCGGACTCTGAATTAATTTCATAGCAGGCTCCCCGATGCTTATTGTc > 5:60144/1‑138 (MQ=255) atccAAATGGAGGCAAAGTTCATTGCTTTCCACGACCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCa > 7:202066/1‑76 (MQ=255) aaTGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGCTCTTCATTGCTCAGCCTGGTGGCTTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCGGTCCAGATTGTGTATATg > 5:276524/1‑139 (MQ=255) gCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCCCCAGAACTTCATTGCTCAGCCTGTAGGATTGCTGCTGACTCTCTTTTAATTTCATATCCGGCTCCCCATTCAAAATTGTCTATATGTCGTca > 6:185962/1‑138 (MQ=255) ttttCATTGCTTTCAAAGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGGTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCGCTTTCCATATTGTCTATATGTCGTCACACGt < 3:296868/137‑1 (MQ=255) ttCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGAct > 7:233437/1‑80 (MQ=255) ttCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGAct > 5:266455/1‑80 (MQ=255) ttCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGAct < 6:266455/80‑1 (MQ=255) ttCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGAct < 8:233437/80‑1 (MQ=255) cATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata < 1:116465/113‑1 (MQ=255) cATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCata > 2:116465/1‑113 (MQ=255) cTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCGCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGttttt < 3:53987/139‑1 (MQ=255) cTTTCCACGTAGTT‑TATTCCTGTCCCAAAGGCACAAGATCATCATTGTTAAGCCGGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACTCGTTATGttttt < 2:103749/139‑1 (MQ=255) ttCCACGTCCGT‑TTTTCCTGTCGCAAAGGCACCAGATCTTCATTGCTAAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCAGGCTCCCCGTTCCATATAGTCTATATGTAGTCAAACCTTATGTTTTTTg > 4:107563/1‑139 (MQ=255) tCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATgtcgt > 7:87466/1‑120 (MQ=255) tCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATgtcgt < 8:87466/120‑1 (MQ=255) tCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGtttttt < 5:16876/137‑1 (MQ=255) tCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGGTATGTTTTTTg > 1:164227/1‑138 (MQ=255) gT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATg < 5:80363/139‑1 (MQ=255) ttCCTGTCCCAAAGGCTCCAGATCTTCATTGCTCCGCCTGTTGGATTGGTGCTGACTCTCTTTTAATTTCATAGCAGGCTCCCCTTTCCATATTGTCTATATGTCGTCACTCGTTATGTTTTTTGACATTAGATGTCa < 2:245119/138‑1 (MQ=255) ttCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCa < 5:288125/138‑1 (MQ=255) ttCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCa < 5:255444/138‑1 (MQ=255) ttCCTGTCCCAAAGCCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCTTAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCa < 3:107563/138‑1 (MQ=255) ttCCTGGCCCAACGGCACCAGATCTTCATTGCCCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCa < 3:85829/138‑1 (MQ=255) tCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTaa < 5:222984/137‑1 (MQ=255) aCCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTaa > 2:244098/1‑127 (MQ=255) aCCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTaa < 1:244098/127‑1 (MQ=255) cAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGt < 7:299583/139‑1 (MQ=255) cAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGt < 5:210579/139‑1 (MQ=255) aTCTTCTTTGCTCAGCCTGTTGGATTGCTGCTGAAGCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCa < 6:126135/138‑1 (MQ=255) ttCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcccc < 6:90701/60‑1 (MQ=255) ttCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcccc > 5:90701/1‑60 (MQ=255) cATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCta < 3:214242/73‑1 (MQ=255) cATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCta > 4:214242/1‑73 (MQ=255) cATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCa < 2:164227/133‑1 (MQ=255) ttGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATaa > 2:118672/1‑139 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc < 8:306181/51‑1 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTcc > 7:306181/1‑51 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAaca < 5:146110/138‑1 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAaca < 3:7701/138‑1 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAaca < 1:18997/138‑1 (MQ=255) cTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAaca < 4:98607/138‑1 (MQ=255) | GCGAAAGGCCGATCGCAATTAATCCTCCCACGGTCGCGTAGGTCGGTATGTTATGTATACATCCCATCCAAATGGAGGCAAAGTTCATTGCTTTCCACGTCCGT‑TTTTCCTGTCCCAAAGGCACCAGATCTTCATTGCTCAGCCTGTTGGATTGCTGCTGACTCTCTTTTAATTTCATAGCCGGCTCCCCTTTCCATATTGTCTATATGTCGTCACACGTTATGTTTTTTGACATTAGATGTCACTTAATATAACTGAAGAGTCAGACAATAACA > CP006881/3571429‑3571703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |