| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 2,039 | 0 | C | T | 99.1% | 11650.5 / 36.1 | 3628 | intergenic (–/‑939) | –/eryR | –/– |
| Reads supporting (aligned to +/- strand): ref base C (17/16); new base T (1946/1642); total (1969/1659) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 3689 total aligned reads displayed.
CTTGGGTCCAACTTTATAGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTCATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACA > pSIJ663_pHT315_araE_xy/1903‑2175 | ttGGGTCCAACTTTATAGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTAAACGATATCTGTTATGTGCGATGAATATTTTTTAt > 5:4372/1‑138 (MQ=255) cAACTTTATAGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATAc > 5:145985/1‑137 (MQ=255) aaCTTTATAGCATTTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAg < 5:213404/139‑1 (MQ=255) cTTTATAGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCATCGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGa < 7:182638/139‑1 (MQ=255) taGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGAtgtt < 1:66507/138‑1 (MQ=255) aaTTAGTATATGGTCATTTAAAATCTTTACAAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTTCGATGATTATTTTTTATAAATACCAGGAGGTTGTTTc > 4:51594/1‑139 (MQ=255) aTTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTGTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAAGGATATCTTTTATGTGCGATGAATATTTTTTATAATTTCCAGGATGTTGTTTCt > 3:55604/1‑139 (MQ=255) ttAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTAtt > 3:216978/1‑139 (MQ=255) gTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTAc < 6:64308/139‑1 (MQ=255) tataTGGTCATTTAAAATCTTTACCAATTGAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACg < 5:283269/139‑1 (MQ=255) gatatGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGTGTG‑TTCAACGATATCTTTTATGTGCGATGAATATCTTTTATAAATACCAGGATGTTGTTTCTTTACg < 8:190918/138‑1 (MQ=255) tatGGTCATTTAAAATCTTTACCAATTCAACTCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTg < 2:88105/139‑1 (MQ=255) tatGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGTGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTg < 1:166935/139‑1 (MQ=255) tatGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTg < 6:177626/139‑1 (MQ=255) tCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTta > 3:2822/1‑139 (MQ=255) tCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGGCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGGGCTTta < 1:103402/139‑1 (MQ=255) tttAAAATCTTTACCAATTCAGCGCTATTTGGTTCTTTAGGATTTTGCCCGCCATAGTCGGGGTG‑TTGAACGATATCTTTTATGTGCGTTGCATATTTTTTATTATTACCAGGATGTTGGTTCTTTACGGGCGTttta > 8:107471/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTTGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGGG‑TTCAACGCTATCTTTTATGTGCGTTGAATATTGTTTAGTAATACCAGGATGTGGTTTCTTTACGTCCTTtata > 2:152636/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGAt < 2:45588/115‑1 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtata > 7:83797/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtata > 4:272754/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtata > 1:241314/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtata > 8:64900/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtata > 3:198780/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATAACATGATGTTGTTTGTTTACTTGCTTtata > 3:34717/1‑138 (MQ=255) tttAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATATTTTATGTGCGATGAATATTTTTTATAAATAACAGGATGTTGTTTAGTTACGTGCTTtata > 1:145770/1‑138 (MQ=255) tCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGACAGACATAGTCGGGGTG‑TTAAACGATATCATTTATGTGCGATCAATATTTTTTATAAATACCAGGGTGTTGTTTCTTTACGTGCTTTATAAATCCgg > 8:42425/1‑138 (MQ=255) cTTTACCAATTCAACGCTATTAGGTTAGTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATAACTTTATTGTGCGATGAATATTTTTTATAAATACCAGGATGTTGATTCTTTACGTGCTTTATAAATCCggg > 3:134896/1‑138 (MQ=255) tACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGaaa < 2:69911/138‑1 (MQ=255) tACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGa < 8:151464/136‑1 (MQ=255) tCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTg > 7:102344/1‑113 (MQ=255) tCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTa > 5:256681/1‑139 (MQ=255) aaCGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTAc < 5:126450/138‑1 (MQ=255) aaCGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATAGCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTAc < 5:169711/138‑1 (MQ=255) aaCGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGGG‑TTCAACGATATCTTTTATGTGCTATTAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTAc < 4:68623/138‑1 (MQ=255) cGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATc > 8:128625/1‑139 (MQ=255) ttAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGt > 3:176451/1‑136 (MQ=255) ttAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAg < 4:155652/139‑1 (MQ=255) ttCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTg > 8:247120/1‑139 (MQ=255) cTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCttt < 4:198466/92‑1 (MQ=255) cTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc < 1:40777/138‑1 (MQ=255) tttAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc > 7:288829/1‑137 (MQ=255) tttAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc > 6:44770/1‑137 (MQ=255) tttAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc > 4:84101/1‑137 (MQ=255) tttAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc > 5:60460/1‑137 (MQ=255) tttAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGc > 1:279270/1‑137 (MQ=255) tAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGaaa < 7:209659/112‑1 (MQ=255) tAGCATTTTGCCCGAC‑TTTTCCGGGTGTTTCAAGGATATTTTTTTTTTGCTATTAATATTTTTAATAAATACATGTTTTTTTTTTATTTAC‑TTCCTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 2:109844/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATAGCAGGATGTTGTTTCTTTACGTTCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 5:106435/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 2:216842/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 6:245556/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 4:173491/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 2:291818/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 3:9598/138‑1 (MQ=255) aGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 6:221332/138‑1 (MQ=255) aTTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATTTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagtcatg < 4:235594/139‑3 (MQ=255) ttttGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCTGGAAACCTTTTTACATCGTTAGAAGTGaaagtcaagt > 6:153202/1‑139 (MQ=255) ttGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTCATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGATACATTTTTACATCGTTAGAAGTGCAAGTCAAGTta > 3:242035/1‑139 (MQ=255) tGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGaaa < 1:126528/104‑1 (MQ=255) tGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTAc > 3:156125/1‑113 (MQ=255) tGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt > 7:6662/1‑131 (MQ=255) tGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTta > 3:10882/1‑138 (MQ=255) tGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACAAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTta > 7:161/1‑138 (MQ=255) cGACATAGTCGGTGTG‑TTCAACGATATCTTTTATGTGCGATGTATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 5:23439/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCATCGATATCTTTTATGTGCGATGAATATTTTTTATTAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 6:10945/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 5:18885/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 8:267046/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 1:255672/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 2:133600/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 7:46319/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 7:262967/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 6:83419/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 3:263626/139‑1 (MQ=255) cGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 4:136230/139‑1 (MQ=255) cGACATACTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 1:227380/139‑1 (MQ=255) aCATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTAc < 8:285056/107‑1 (MQ=255) aCATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTAt < 4:29665/139‑1 (MQ=255) tCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATaa < 2:180407/139‑1 (MQ=255) ggTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGAt < 1:208267/139‑1 (MQ=255) ggTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGAt < 3:75495/139‑1 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTtat > 5:81134/1‑75 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt > 4:115669/1‑114 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt > 1:88299/1‑114 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTatat < 8:214462/124‑1 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt > 7:142153/1‑126 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTAt > 6:203770/1‑128 (MQ=255) gtg‑tTCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGAtt > 7:238340/1‑139 (MQ=255) ttCAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTtgt > 2:197629/1‑139 (MQ=255) cAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTAt < 4:256357/123‑1 (MQ=255) cAACGATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTCCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTtgtg > 1:188406/1‑138 (MQ=255) gATATCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGt < 2:269701/139‑1 (MQ=255) gATATCTTTTATGTGAGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGt < 2:234163/139‑1 (MQ=255) tatCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGttt > 7:118327/1‑139 (MQ=255) tCTTTTATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGcaagt < 6:291213/101‑1 (MQ=255) tttATGTGCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCca > 8:80547/1‑139 (MQ=255) tgtgCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCacaa > 8:168013/1‑138 (MQ=255) tgCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAg < 6:132127/139‑1 (MQ=255) gCGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGt < 4:216852/103‑1 (MQ=255) cGATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGtt > 2:252382/1‑139 (MQ=255) gATGAATATTTTTTATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGtt < 6:269046/138‑1 (MQ=255) | CTTGGGTCCAACTTTATAGCAATTAGTATATGGTCATTTAAAATCTTTACCAATTCAACGCTATTAGGTTCTTTAGGATTTTGCCCGACATAGTCGGGGTG‑TTCAACGATATCTTTTATGTGCGATGAATATTTTTCATAAATACCAGGATGTTGTTTCTTTACGTGCTTTATAAATCCGGGAAACATTTTTACATCGTTAGAAGTGCAAGTCAAGTTATATGTATCTATAATGATTTGTGGAAGTTTTGCCACAACAGTTGGTTTATTTACA > pSIJ663_pHT315_araE_xy/1903‑2175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |