| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 5,478 | 0 | G | A | 97.1% | 7064.0 / 19.9 | 2701 | intergenic (+747/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base G (52/15); major base A (1038/1466); minor base C (111/0); total (1217/1484) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.99e-42 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 2701 total aligned reads displayed.
CGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGT > pSIJ663_pHT315_araE_xy/5342‑5612 | tAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGGTCGTCAGGGGGGCGAAGcc > 3:185493/1‑138 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCt > 3:207532/1‑137 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAt > 4:221737/1‑139 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAt > 3:78833/1‑139 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAt > 2:247287/1‑139 (MQ=255) aGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAt > 8:135128/1‑139 (MQ=255) ggTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTAGGAAGGGGGGGCGAGCCTATGGTAAAAc > 6:195043/1‑139 (MQ=255) ggAGAGGGCACGTGGGTGCTTCCTGGGGTAAAGGCCTGGTATCTTTATTGTCCTGTCGGGTTTGGCCACGTCTTACTTGCGCGTCGTTTTTTGTGATGCTCGTCAGGGGGGGGGAGCCTATGGAAAAACGCCAGCAAcg < 3:104916/139‑1 (MQ=255) gcgagCGCCCGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc < 1:257163/137‑1 (MQ=255) gagcGCGCACGAGGGAGCTTCCAGGGGGAACCGCCTGGTATCTTTATAGTCCTGTCGGGGTGCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGGCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAAcgc < 3:24190/139‑1 (MQ=255) gagaGCGCACGAGGGAGCTTCCAGGGGGTAACGCCTGGTATCTTTATAGACCTGTCGGGTTTCGCCACCTCTGACTAGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGACAAGGCTATCGTAAAACCCCAGCAAcgc > 3:125034/1‑139 (MQ=255) gcgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGCAGCCGATGGAAAAACGCCAGCAACGCGGcc > 7:210248/1‑139 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCCCCTCTGACTTGAGCGTCGATTTTTGTGCTGCTGGTAAGGGGGGCGGAGCCTATGGAAAAAAGCCAGCAACGCgggcg > 5:205714/1‑136 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCCCCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACCCGGCCt > 2:16250/1‑139 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGaaa < 6:224693/120‑1 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACgccgccg > 4:39803/1‑138 (MQ=255) cgcACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCt > 4:27849/1‑139 (MQ=255) cACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTTTGCTTCTCCTCAGTGGGGCGTAGCCTAAGGAAAAAAGCCAGACACGCGGCCttt > 6:94673/1‑139 (MQ=255) cACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCt > 2:183972/1‑137 (MQ=255) gtgggAGCTTCCAGGGGTAAACGCCTGGTTTCTTTATAGTCCTGTCGGGTGTCGCCACGTCTGACTTGAGCGTCGATTTTTGTGATGCTGGTCAGGGGGGCGAAGCCTATGTAAAAACGCCAGCAACGCGGCCTTTTTa < 8:197693/137‑1 (MQ=255) gAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTAGCCACCTCTGACTTGAGCGGCGATTTTTTTTGTTGGAGTGAGCGGGGCGCAGCCGAAGGAAAAAACCCACCCACGCGGCCgtttt > 2:274146/1‑138 (MQ=255) aGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGtt > 8:4556/1‑139 (MQ=255) ttCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCct > 5:65451/1‑139 (MQ=255) aGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcc < 7:41730/139‑1 (MQ=255) gggggAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcct > 5:118042/1‑139 (MQ=255) ggggAAACGCCGGGTATCTTTATTGGCGTGGCGGGTTGCGCCACCGCTGACTTGAGGGGCGATTTTTGTGAGGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcc < 3:157711/137‑1 (MQ=255) gAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttg < 1:39644/139‑1 (MQ=255) aaaCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCCCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACCACTCCTTTTTACGTTTCcttgccttttgc > 6:119810/1‑139 (MQ=255) aCGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCCACGCGGCCATTTTACGGTTCctggcctttttctg > 8:218721/1‑139 (MQ=255) ccTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcc < 8:78591/139‑1 (MQ=255) tATCTTTTTAGTGCTGTCGGGTTTCGACACCTGTGACTTGAGAGTCGATTTTTGTGATGATCGGCTTGGGGGCTAAGCCTATGGAAAAACGCCAGCAACGCTGCCTTTTTACTGTTCctggccttttgctggccttttg < 1:282765/139‑1 (MQ=255) cTTTTTCGTGCTGGCGGGTTTCGCCACCTCTGAGTTGCGCGTCGATTTTTGGGAGGCTGGTCAGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTggccttttgctggccttttgct < 5:156595/138‑1 (MQ=255) tataGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACA > 8:25814‑M1/1‑139 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt > 8:237228/1‑139 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 8:113768/139‑1 (MQ=255) gTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGGCGATTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT < 3:224839‑M1/138‑1 (MQ=255) ccTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCt > 1:100282/1‑139 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGGGAAGCCAATTGAAAAAAGCCAGCCACGCGGCCTTTTTACGGTTCCTGGGCTTTTGGGGGGCGTTTGCGAACATGTTAtt > 4:59226/1‑139 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCCGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCtt > 4:202727/1‑139 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTggccttttgctggccttttgct < 7:279988/128‑1 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGtt < 8:60975/136‑1 (MQ=255) cTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCt < 2:37191/138‑1 (MQ=255) gTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTc < 5:88530/139‑1 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGTTTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTc < 5:252244/138‑1 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTTTTATGCTCGTCATGGGGGCGAATCCTATGGAAAAACGCCAGCAACCCGGCCTTTTTTAGGTTGCTGGCCATTTGCTGGCCGTTTGCTCACAAGTTCtttac > 4:261529/1‑137 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTTAAGCTCGTCAGGGGGGCGAAGCCAATGGAAAAACCCCAGCAACCCGGCCTTTTTACGGTTACTGGCCTTTTTCTGGCCTTTTTCTCACAAGTTAttta > 2:60551/1‑137 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGGTCGTCAGGGTGGCGGAGAGTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTc < 8:154265/138‑1 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTGTTTcc > 2:82950/1‑139 (MQ=255) tCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTcc > 1:9436/1‑139 (MQ=255) gggTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTg < 4:13198/139‑1 (MQ=255) tttCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATTGAAAAACGCCAGCAACCCGGCCTTTTTACGGTTCCTGGCCTTTTTCAGGCCTTTTGCTCAAATGTTCTTTCCTGCGt > 6:294376/1‑139 (MQ=255) atacGCCACCTCTGACTTGAGCGTCTATTTTTGTTATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGt < 2:122948/136‑1 (MQ=255) tCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa > 7:237338/1‑139 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 5:135111/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 1:170571/138‑1 (MQ=255) cGCCACCTCTGACTTGAGCGTCGATTTTTGTGACGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa < 5:1040/138‑1 (MQ=255) gCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATc < 7:89930/139‑1 (MQ=255) aCCTCTGACTTGAGCGGCGATTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATcccc < 8:179049/139‑1 (MQ=255) ctctGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTAAGGAAAAACCCCCCCAACCCCGCCATTTTACGGTTACTGGCCTTTTGCTGGCCGTTTTCTCACAAGTTAATTCCTGCCTTATACCCt > 6:27102/1‑138 (MQ=255) tGACTTGAGCGTCGATTTTTGTGATGCTCGTCTGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 1:222413/139‑1 (MQ=255) gACTTGAGCGTAGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTc < 5:295816/139‑1 (MQ=255) aCTTGAGCGTCGATTTTTTTGATTCTCGTCATGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTTCTCACATGTTCTTTCCAGCTTTAACCCCAGATTCt > 8:280555/1‑139 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 1:235956/137‑1 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 7:135128/137‑1 (MQ=255) aCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCt < 7:169733/139‑1 (MQ=255) aCTTGAGCGTCGATTTTTGGGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGAtt < 3:141537/137‑1 (MQ=255) cTTGAGCGTCTTTTTTGGTGCTGCTCGGCTGGGGGGCGAAGCCTAGGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCtg < 1:118248/139‑1 (MQ=255) cTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGGGAAGCCTATGGAAAATCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCt < 4:149370/138‑1 (MQ=255) aGCGTCGATTTTTGTGATGCTGGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACg < 6:163170/73‑1 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTa > 7:59472/1‑122 (MQ=255) aGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGa > 1:188189/1‑139 (MQ=255) gCGTCGTTTTTTGTGATGCGCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 5:226508/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 2:225473/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 6:140493/139‑1 (MQ=255) gCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 7:187300/139‑1 (MQ=255) gCGTCGATGTTTGTGATGCTCGGCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 5:180628/139‑1 (MQ=255) gCGTCGAGTTTTGTGATGCTCGTCCGGGGGGCGAAGCCTATTGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 1:206752/139‑1 (MQ=255) cGTCGATTTTTGTGATGCTCGTCATGGGGGCGAATCCTTTGGAAAAACGCCAGCCACGCGGCCTTTTTACGGTTCCTGGACTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 3:59226/138‑1 (MQ=255) cGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 2:203929/138‑1 (MQ=255) cGTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt < 4:181146/138‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa < 4:77095/139‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa < 1:72212/139‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa < 7:150319/139‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa < 7:76069/139‑1 (MQ=255) gTCGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACCCCAGCACCGCGGCC‑TTTTACGGTTCCTGGGCTTTTGCTGGCCTTTTGCTCACATGTTGTTTCCTGCGTTATCCCCTGATTCTGTGGATAAc > 4:240703/1‑139 (MQ=255) cGATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGAt > 3:28563/1‑135 (MQ=255) gATTTTTGTGATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCg < 3:41935/139‑1 (MQ=255) tgtgATGCTCGTCAGGGGGTCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 6:250552/138‑1 (MQ=255) tgtgATGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTa < 3:273957/138‑1 (MQ=255) ggtctGCTCGTCAGGGGGGCGAAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGGTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAc < 1:152359/134‑1 (MQ=255) aTGCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGcc < 7:117878/139‑1 (MQ=255) gCTCGTCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcctt < 5:271158/78‑1 (MQ=255) tCAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagt < 4:106426/139‑1 (MQ=255) cAGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtg < 7:25814/139‑1 (MQ=255) aGGGGGGCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga < 6:51710/139‑1 (MQ=255) ggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 1:59496/139‑1 (MQ=255) ggggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtgag < 3:259430/139‑1 (MQ=255) gggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTggccttttgctggccttttgct < 6:104143/74‑1 (MQ=255) gggggCGAAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGc > 5:5045/1‑139 (MQ=255) gggggCGAAGCATATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtg < 6:68603/136‑1 (MQ=255) | CGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGT > pSIJ663_pHT315_araE_xy/5342‑5612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |