Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,610,156 G→C 18.4% intergenic (‑44/+32) U712_18595 ← / ← U712_18600 Low molecular weight protein‑tyrosine‑phosphatase ywlE/UPF0059 membrane protein ywlD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,610,1560GC18.4% 164.0 / 2.7 64intergenic (‑44/+32)U712_18595/U712_18600Low molecular weight protein‑tyrosine‑phosphatase ywlE/UPF0059 membrane protein ywlD
Reads supporting (aligned to +/- strand):  ref base G (41/6);  new base C (2/10);  total (43/21)
Fisher's exact test for biased strand distribution p-value = 6.63e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCAGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCGAC  >  CP006881/3610022‑3610286
                                                                                                                                       |                                                                                                                                  
tCAGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAATAAAAAAGAAAc                                                                                                                                >  4:169665/1‑139 (MQ=255)
tCAGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCAATGTCAGTCACCCCGTATTTTTATCTATTATATTTGAAGAAAAAAGAAAc                                                                                                                                >  7:150669/1‑139 (MQ=255)
  aGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCTCGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTGTATTATATATGAAGAAAAAAGAAACgg                                                                                                                              >  8:74434/1‑139 (MQ=255)
  aGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCCCCCCTTATTTTTCTATATTATATATGAAGAAAAAAGAAAAgg                                                                                                                              >  6:22053/1‑139 (MQ=255)
  aGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACgg                                                                                                                              >  1:200374/1‑139 (MQ=255)
        tcccttTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACtt                                                                                                                        >  8:287504/1‑139 (MQ=255)
        tcccttTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACtt                                                                                                                        >  3:69506/1‑139 (MQ=255)
                    aTTCATTAAAAAACCGCCCCACCAATTGGGCTGCGGCACTTATTTCCATTACACAAAAAAAAAATACCCATGTCAGTCACCCATTATTTTTCTAAATTAAATATCAACAAAAAACAAACGGCGACTTCGTTTCTTTTAt                                                                                                            <  4:147965/139‑1 (MQ=255)
                     ttGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTAtt                                                                                                           >  7:14368/1‑139 (MQ=255)
                     ttGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTAATTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACATCGTTTCTTTTAtt                                                                                                           >  7:31873/1‑139 (MQ=255)
                                accgcCTCAGCCTTGGGGCTGGGGAATGTATTTCCAGAACACAAAAAAAAAATAACAATGTCAGTCACCCCTTATTTTTCTATATTATATATCAAAAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTaaa                                                                                                <  8:14368/137‑1 (MQ=255)
                                  cgcCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAAtt                                                                                              >  8:218246/1‑139 (MQ=255)
                                          ccttggggCTGCGGCACGAATTACCAGAACCCAAAAAAATAAAAACCTTGCCAGTCCCCCATTATTTTTCTATATTATATATCAACAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAag                                                                                      <  2:45601/134‑1 (MQ=255)
                                             ttGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAagcag                                                                                   >  8:170760/1‑139 (MQ=255)
                                             ttGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAagcag                                                                                   >  3:298102/1‑139 (MQ=255)
                                               gggCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGCCTTCGTTTGTTTTATTGGTATATTAAATTGGCAAAagcagga                                                                                 >  7:263710/1‑137 (MQ=255)
                                                 gCTGCGGCACTTATTACCATAACATACAAAAAAAATAACAATGGCAGTCACCACTTATTTTTCTATATAATTTCTGAACAAAAACGAACCGGCGACTTCGTTTCTTTTATTGGTATATTAAATTTGCAAAAGCAGCttt                                                                               <  8:224477/139‑1 (MQ=255)
                                                  cTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCttt                                                                               >  5:251797/1‑138 (MQ=255)
                                                     cGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATc                                                                           >  7:27251/1‑139 (MQ=255)
                                                     cGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATc                                                                           >  8:144225/1‑139 (MQ=255)
                                                     cGGCACGTATTTCCAGTACAGACAAAAATAATATCCATCTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGAGTTCCTTTCTATTATTGGTAAATTAAATTTGCAAAAGCAGCTTTAAt                                                                            >  1:286037/1‑138 (MQ=255)
                                                         acttataTCCAGTACACAAAAAAATAAAATACTTGCACTCCCCCAATTTTTTTTATAAATAATATATCAAAAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCaaa                                                                       <  1:121696/136‑1 (MQ=255)
                                                         aCGTATTACAAGAACCCAAAAAAATAATACCCATGTCAGTCCCCCCTTTTTTTTCTATATAATATATTAACAAAAAACACACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCaaa                                                                       <  7:78176/139‑1 (MQ=255)
                                                           ttATTCCCAGTAAAGAAAAAAATAAATACCATTCCAGTCACCATTTATTTTTCTTTATTATTTTTTAATAAAAAATCAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAac                                                                      <  8:27251/137‑1 (MQ=255)
                                                                tCCAGTACACAAAAAAAAAATAACCATGCCAGTCACCCCTTATTTTTCTATATTATATATCAAAAAAAAACACACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGAt                                                                 <  5:62236/138‑1 (MQ=255)
                                                                       cAGACAAAAATAATATCCATGTCAGTCACCCCGTATTTTTCTCTTTTATATATGAAGAAAAAAGAACCGGCGCCTTCGTTTCTTTTATTGGTATATTAAATTGTCAAAAGCAGCTTTAATCAATACACGATTAATatga                                                         >  3:62595/1‑139 (MQ=255)
                                                                         gACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATatgatg                                                       >  7:8207/1‑139 (MQ=255)
                                                                          aCAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGc                                                      >  7:160440/1‑139 (MQ=255)
                                                                                ataaaaTCCATGTCCGCCCCCCCTTATTTTCCAATATAATAAATGAACAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGa                                                <  8:291406/139‑1 (MQ=255)
                                                                                 taaaaTCCATGGCCGTCCCCCTTTTTTTTTCTCTATTATATATTACTAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAg                                               <  8:185776/139‑1 (MQ=255)
                                                                                    tatCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAgcgc                                            >  5:3362/1‑139 (MQ=255)
                                                                                    tatCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAgcgc                                            >  7:304979/1‑139 (MQ=255)
                                                                                    aatCCATGTCAGTCACCCCTTATTTTTCTATATTATATATTAACAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAgcgc                                            <  8:222758/138‑1 (MQ=255)
                                                                                        cttGTCAGTCACCCCTTATTTTTCTATATTATATATCAACAAAAAATAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        <  4:298102/137‑1 (MQ=255)
                                                                                        cATGTCAGTCACCCTTTATTTTTATATATTATATATCAAGAAAAACGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        <  5:109184/139‑1 (MQ=255)
                                                                                        cATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        >  7:289339/1‑139 (MQ=255)
                                                                                        cATGTCAGTCACCCCTTATTTTACTATATTAAAAATGAATAAAAAATAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        <  8:289339/139‑1 (MQ=255)
                                                                                         aTGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGc                                       >  2:242239/1‑139 (MQ=255)
                                                                                          tGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCt                                      >  5:277483/1‑139 (MQ=255)
                                                                                           gtcagtcaCCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTg                                     >  8:147578/1‑139 (MQ=255)
                                                                                           gtcagtcaCCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTg                                     >  3:281124/1‑139 (MQ=255)
                                                                                                tcaCCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATTTTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTAtgt                                >  2:86030/1‑139 (MQ=255)
                                                                                                tcaCCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTAtgt                                >  3:149371/1‑139 (MQ=255)
                                                                                                tcaCCCCATATTTTTCTCTATAATATATGAAGAAAAAACAAACGCCGACTTCGTTTCTTTTATTGGTATATTAAATTGTCAAAAGCAGCATATATCCAAACACGATTAATATGATGCCCACGAGCGCTTCGCTGTAtgt                                >  8:81956/1‑139 (MQ=255)
                                                                                                   cccatttATTTTACTCTATTAAAAAGAAATAAAAACAAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGc                              <  4:43753/134‑1 (MQ=255)
                                                                                                   cccaTTATTTTTCTCTTTTTTATATTAAAAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGcc                             <  5:270549/139‑1 (MQ=255)
                                                                                                    cccTTATTTTTCTCTATTATATTTGAAGAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGATCATTTAATCAAACAACTATTAATATGATGCCCCCTAGCGGTTCCGTGTATGTGc                              >  7:248868/1‑137 (MQ=255)
                                                                                                    cccTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCACCCGAGCGCTTCGCTGTATGTGcc                             >  4:167610/1‑138 (MQ=255)
                                                                                                     cctttATTTTTTTCTATTATATATCAATAAAAAATAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCa                            <  8:8207/136‑1 (MQ=255)
                                                                                                         tATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAAATGGCAAAAGCAGCTTTAAAACAAAAACGATTAATATGATGCCACCGAGCGCTTCGCTGTATGTGCCAAGc                         >  3:59427/1‑138 (MQ=255)
                                                                                                         tATTTTTATATATTAAATTACAAAAAAAAACAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGc                         <  8:263710/138‑1 (MQ=255)
                                                                                                                          tatGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGtttt       >  7:12424/1‑139 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTcc     >  7:54195/1‑138 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTcc     >  2:143280/1‑138 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCg    >  1:101493/1‑139 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCg    >  5:59194/1‑139 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCg    >  5:130540/1‑139 (MQ=255)
                                                                                                                             gaagaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCg    >  7:263542/1‑139 (MQ=255)
                                                                                                                              actaaaaacGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCg    <  2:200374/135‑1 (MQ=255)
                                                                                                                               agaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        <  1:97686/101‑1 (MQ=255)
                                                                                                                               agaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCg                                        >  2:97686/1‑101 (MQ=255)
                                                                                                                               agaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCAt                      >  4:139378/1‑119 (MQ=255)
                                                                                                                               agaaAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCAt                      <  3:139378/119‑1 (MQ=255)
                                                                                                                                 aaaaaaGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGCTGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCGAc  >  6:311852/1‑137 (MQ=255)
                                                                                                                                       |                                                                                                                                  
TCAGCCCTTCCCTTTCTGCAATTGATTTAAAAAGCGCCTCAGCCATTGGGCTGCGGCACGTATTTCCAGTACAGACAAAAATAATATCCATGTCAGTCACCCCTTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGGCGACTTCGTTTCTTTTATTGGTATATTAAATTGGCAAAAGCAGCTTTAATCCAAACACGATTAATATGATGCCCCCGAGCGCTTCGCTGTATGTGCCAAGCCATGACTGCACTTGTTTTCCGAC  >  CP006881/3610022‑3610286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: