Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	125,619	C→T	R21C (CGT→TGT)	U712_00560 →	DNA‑directed RNA polymerase subunit beta'

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	125,619	0	C	T	100.0%	363.3 / NA	100	R21C (CGT→TGT)	U712_00560	DNA‑directed RNA polymerase subunit beta'
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (51/49);  total (51/49)

CAAAAGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCCGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCGGG  >  CP006881/125487‑125747                                                                                                                                     |                                                                                                                                 cAAAAGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTATGCCCATTGCTAGATGTGAAAAATTTTGAGTATATGAACATCTGTATTGCTTCACCAGATAAAATCTGTTCAt                                                                                                                            >  2:12896/1‑139 (MQ=255) cAAAAGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCAt                                                                                                                            >  2:207277/1‑139 (MQ=255) cAAAAGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCAt                                                                                                                            >  8:34064/1‑139 (MQ=255)   aaaGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATgg                                                                                                                          >  3:78384/1‑139 (MQ=255)   aaaGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATgg                                                                                                                          >  6:183141/1‑139 (MQ=255)   aaaGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATgg                                                                                                                          >  2:222860/1‑139 (MQ=255)     aGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTc                                                                                                                        <  4:78384/139‑1 (MQ=255)     aGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTc                                                                                                                        >  3:214471/1‑139 (MQ=255)     aGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTc                                                                                                                        >  6:116115/1‑139 (MQ=255)     aGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTc                                                                                                                        >  8:22576/1‑139 (MQ=255)           atCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTg                                                                                                                   <  2:48132/138‑1 (MQ=255)              tctAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGAAGGCCCCTAGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTACACCAGATAAAATCTGTTCATGGTCTTTAGgtg                                                                                                                >  1:31746/1‑138 (MQ=255)                tAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGgtg                                                                                                                <  7:296622/136‑1 (MQ=255)                 aGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGgtgaagt                                                                                                            >  5:146102/1‑139 (MQ=255)                 aGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGgtgaagt                                                                                                            >  1:147107/1‑139 (MQ=255)                  gTTATAAAGGCAAGTCACATCGGATAAACCGAAGATAAAAAGGGAGGTCGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGgtgaa                                                                                                              <  7:295124/136‑1 (MQ=255)                        aaGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAg                                                                                                     >  1:9497/1‑139 (MQ=255)                             aaGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTg                                                                                                 >  2:13752/1‑138 (MQ=255)                              aGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGaa                                                                                               <  1:222860/139‑1 (MQ=255)                                    aTCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATa                                                                                         <  5:183141/139‑1 (MQ=255)                                     tCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATgg                                                                                                                          >  7:94736/1‑105 (MQ=255)                                     tCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATgg                                                                                                                          <  8:94736/105‑1 (MQ=255)                                     tCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATa                                                                                         >  3:169278/1‑138 (MQ=255)                                          tAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTAt                                                                                   >  8:58195/1‑139 (MQ=255)                                            aTCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 <  6:146102/139‑1 (MQ=255)                                                       aaaaGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAAc                                                                      <  5:269475/139‑1 (MQ=255)                                                       aaaaGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAAc                                                                      <  3:16140/139‑1 (MQ=255)                                                              aGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGaa                                                                 >  1:2014/1‑137 (MQ=255)                                                                gTAGTCCCCTTGCTTGATGTTATCAATTTTGAGTATATGAAGATCGGTTTTGCTTCACCAGATAAAATCTGTTCATGGTATTTTGGTGTAGTGAAAAATCCGGATACGATAAACTATCGTACGTTAAAACGTGATAAgg                                                             <  6:337297/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATTGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  5:315780/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGTTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  2:147107/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  2:68710/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  8:4203/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  1:207277/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  5:183967/139‑1 (MQ=255)                                                                gTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  7:34064/139‑1 (MQ=255)                                                                   ggCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  6:145926/136‑1 (MQ=255)                                                                   ggCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             >  5:145926/1‑136 (MQ=255)                                                                     cggcTTGCTAGATGTGAACAATTTAGATTATATGAACATCGGTCTTGGATCAACTTATAAAATCTGTTCATGGTCTTTTCGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGACAAGGACGGt                                                        <  2:31746/136‑1 (MQ=255)                                                                       ccTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTc                                                       >  7:116609/1‑138 (MQ=255)                                                                         ttGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 <  2:27478/110‑1 (MQ=255)                                                                         ttGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 >  1:27478/1‑110 (MQ=255)                                                                               gATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCATATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCg                                              <  1:12896/139‑1 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             >  4:13631/1‑118 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  6:165789/118‑1 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             >  3:101044/1‑118 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  4:101044/118‑1 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  3:13631/118‑1 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             >  5:165789/1‑118 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCa                                        >  2:44631/1‑139 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCa                                        >  6:235117/1‑139 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCa                                        >  6:187610/1‑139 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCa                                        >  3:107061/1‑139 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCa                                        >  5:203775/1‑139 (MQ=255)                                                                                     aaCAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTGCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAACCCTGAAAAGGACGGTCTATTCTGCGAACTCa                                        >  8:222255/1‑139 (MQ=255)                                                                                             tGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTTTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCgg                                 <  1:44631/138‑1 (MQ=255)                                                                                             tGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCgg                                 <  5:235117/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCTCCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  4:213897/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 >  5:239758/1‑88 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 <  6:239758/88‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAcc                              >  3:39861/1‑139 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  5:187610/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  8:116490/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  1:72860/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  5:116115/138‑1 (MQ=255)                                                                                               aGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  6:203775/138‑1 (MQ=255)                                                                                                  atatGAACATCGGTCTTGCTTCACCAGATAAAATCTGTACATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACATGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGAc                           >  3:73316/1‑139 (MQ=255)                                                                                                    atGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAAc                                                                      >  1:277616/1‑94 (MQ=255)                                                                                                    atGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAAc                                                                      <  2:277616/94‑1 (MQ=255)                                                                                                     tGAACATCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTa                         <  7:22576/138‑1 (MQ=255)                                                                                                           tCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATa                                                                                         <  7:90552/68‑1 (MQ=255)                                                                                                           tCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATa                                                                                         >  8:90552/1‑68 (MQ=255)                                                                                                           tCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTg                  >  6:165102/1‑139 (MQ=255)                                                                                                           tCGGTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTg                  >  7:183228/1‑139 (MQ=255)                                                                                                              gTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             <  8:22152/93‑1 (MQ=255)                                                                                                              gTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAgg                                                             >  7:22152/1‑93 (MQ=255)                                                                                                              gTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTggg                >  4:229764/1‑138 (MQ=255)                                                                                                              gTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTggg                >  5:272864/1‑138 (MQ=255)                                                                                                              gTCTTGCTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACAATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACTCATTATCTGACCGACTAAGGACTggg                >  1:315053/1‑138 (MQ=255)                                                                                                                    cTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTc          <  3:189537/138‑1 (MQ=255)                                                                                                                    cTTCACCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCa         >  8:232263/1‑139 (MQ=255)                                                                                                                        aCCAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGc     >  1:305248/1‑139 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAACGCGTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTAGTCAGCGAGCGCAGTTTCGGACCGACTAAGGACTGGGAATGTCAATGCg    >  8:2915/1‑139 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATaaa                                                                                       <  7:41065/56‑1 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATaaa                                                                                       >  8:41065/1‑56 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               <  3:336879/112‑1 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGAc                               >  4:336879/1‑112 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCg    >  8:81576/1‑139 (MQ=255)                                                                                                                         ccAGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCg    >  3:63648/1‑139 (MQ=255)                                                                                                                           aGATAAAATGTGTTCATGGTCTTTTTGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAATAGGACGGTCTATTCTGCGAACGCATTTTCTGACCGACTAAGGACTGGGAATGTCATTGCggg  <  4:73316/139‑1 (MQ=255)                                                                                                                           aGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  <  2:2014/139‑1 (MQ=255)                                                                                                                           aGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  <  1:13752/139‑1 (MQ=255)                                                                                                                           aGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  <  2:305248/139‑1 (MQ=255)                                                                                                                           aGATAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  <  6:272864/139‑1 (MQ=255)                                                                                                                           aGATAAAATCTGTTCATGGTCTTTTGGGGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  <  7:41827/139‑1 (MQ=255)                                                                                                                             aTAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACg                                          <  4:206097/97‑1 (MQ=255)                                                                                                                             aTAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACg                                          >  3:206097/1‑97 (MQ=255)                                                                                                                             aTAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCggg  >  4:89073/1‑137 (MQ=255)                                                                                                                              tAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 <  2:122661/57‑1 (MQ=255)                                                                                                                              tAAAATCTGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCg                                                                                 >  1:122661/1‑57 (MQ=255)                                                                                                                                     |                                                                                                                                 CAAAAGAATAATCTCTAGTTATAAAGGCAAGTGACATCGGTTAATCCGAAGATAAAAAGGGAGGTAGGCCCCTTGCTAGATGTGAACAATTTTGAGTATATGAACATCGGTCTTGCTTCACCAGATAAAATCCGTTCATGGTCTTTTGGTGAAGTGAAAAAGCCTGAAACGATAAACTATCGTACGTTAAAACCTGAAAAGGACGGTCTATTCTGCGAACGCATTTTCGGACCGACTAAGGACTGGGAATGTCATTGCGGG  >  CP006881/125487‑125747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑