| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 92.4% | 495.8 / 33.7 | 145 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (5/6); new base T (43/91); total (48/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 | |||||||||||
Only 100 of 151 total aligned reads displayed.
GATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑C‑TT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317009‑1317287 | gATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑tc‑ttt < 2:2641547/150‑1 (MQ=255) aTGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑tc‑tttt < 1:3331822/150‑2 (MQ=255) tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑tc‑ttttt < 1:2352799/150‑3 (MQ=255) gTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑TC‑ttt‑ttt < 1:2413969/150‑1 (MQ=255) gTCAGGTTTGTTGCTCGGTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGGTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑TC‑ttt‑ttt < 2:2151896/150‑1 (MQ=255) tCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑TC‑ttt‑ttta > 1:1994018/1‑149 (MQ=255) aGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑TC‑ttt‑tttatt < 2:3125981/150‑4 (MQ=255) aGGTTTGTTGCTCGTGGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCAAGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑G‑TC‑ttt‑tttatt < 1:885115/150‑4 (MQ=255) ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATttctt > 1:1129233/1‑150 (MQ=255) gttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCa < 2:3168179/150‑1 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCAAGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGc < 2:175841/150‑1 (MQ=255) cTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCtt > 2:2830834/1‑150 (MQ=255) cTCGTTGCGGTCGGGTCCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCtt < 1:2781286/150‑1 (MQ=255) tCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACCCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTc > 1:3397525/1‑150 (MQ=255) tCGTTGCGGTCGGGTCCAGCTTTGCCCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAATAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTc < 2:1732929/150‑1 (MQ=255) ccGTTGCGGCCGGGTCCAGCTTTACTCGGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTc < 2:3760530/149‑1 (MQ=255) ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCAt < 1:1017868/150‑1 (MQ=255) tGCGGTCGGGTTCAGCTTTCCCCAGGTGATGGTCCATGCAGGTGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCAtt < 2:2856938/150‑1 (MQ=255) tGCGGTCGGGTCCAGCTGTACTCAGGTGATGGTCCATCCAGGTGAAACAGCAACCACAGAAGGGAGAACATTTCATATTGCGGCACGCAATCAAACAGGATGCATAAAGAAAGACCCTGA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTACCttt < 2:913755/150‑1 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACGGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCt < 2:2188099/150‑1 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCt > 1:1844459/1‑150 (MQ=255) ggTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCtt > 1:92003/1‑150 (MQ=255) ttCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGt > 2:1731683/1‑150 (MQ=255) tccAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 1:2316258/148‑1 (MQ=255) cAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCa < 2:2232146/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:2812381/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:1770398/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:511359/150‑1 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa < 2:3561810/150‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGAt < 1:2340225/150‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 2:3959432/150‑1 (MQ=255) tGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa < 1:3727611/150‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg < 2:243157/150‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:1568662/1‑150 (MQ=255) ttCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 1:3882706/150‑1 (MQ=255) cATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac < 1:3815232/150‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 1:434544/1‑150 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTC‑TTCTTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 2:2917588/1‑150 (MQ=255) gCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 1:3185079/150‑1 (MQ=255) cAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACCTGCCACCAGc > 2:2146951/1‑150 (MQ=255) ggTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGccg > 1:1898401/1‑148 (MQ=255) tGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 2:2952332/150‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 2:1325238/150‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 2:1319926/150‑1 (MQ=255) aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:981731/1‑150 (MQ=255) aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:2369705/1‑150 (MQ=255) gCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGGAGATCCACTTGCCACCAGCGGGTCCGCATg > 1:2246060/1‑150 (MQ=255) gCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg < 2:3903110/150‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAACAGACCCTTA‑‑GGGGTCTTT‑TTT‑TTTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGc < 2:4070428/150‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:1559150/150‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 1:3505028/150‑1 (MQ=255) acacAGAAGGGAAAACATTTCATTTTCCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg < 1:2472316/150‑1 (MQ=255) acacAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTTTCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg > 2:3663761/1‑150 (MQ=255) acacAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg < 2:2003635/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCCCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 2:1747239/150‑1 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:1330904/150‑1 (MQ=255) caGAAGGGAAAACATCTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:2416502/150‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:2329173/144‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc > 1:2329173/1‑144 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTc > 2:1212496/1‑150 (MQ=255) aaGGGAAACCATTCCGTGTTGCGGCACCCAATCAAACATGATGCATAAAGAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑GTTTCTCCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2156272/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 1:2830834/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:479231/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2589632/150‑1 (MQ=255) aGGGAAAACATTTCATATTGCGGCACGCAACCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 1:1850296/150‑1 (MQ=255) aCATTTCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc < 2:591430/150‑1 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt < 1:2664000/150‑1 (MQ=255) tttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCCTGGCCGATTTCCGCTGCctcctc > 1:1400937/1‑150 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTCCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTcc < 2:19273/150‑1 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GGGGCCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTcc < 2:3439907/150‑1 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACATGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg > 2:682183/1‑150 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCACAAAAAAGGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt < 1:1753355/150‑1 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 1:2480412/150‑1 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 2:2734678/150‑1 (MQ=255) cgccACGCAATCAAACATGATGCATAAAAAAAGTCCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt < 2:1548858/147‑1 (MQ=255) cGGCACGCAATCAACCATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt < 2:461543/150‑1 (MQ=255) gCACGCAATCAAACATGATGCATAAAAGAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTGTATCGTCAGCTCAGAAGATCCCCTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGc < 1:3744688/150‑1 (MQ=255) gCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCCGTGAATCTGc > 2:3850935/1‑150 (MQ=255) gCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGc < 1:189380/150‑1 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTc < 1:2531159/150‑1 (MQ=255) gCAACCAACCATGATGCATAAGAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:2635511/150‑1 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 2:1613151/1‑150 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGGTTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 2:2346407/1‑150 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 2:202234/1‑150 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCTCCAGCGGATCCGCATGGCCGATTTCCCCTGCCTCTTCCAGGGAATCTGCTTCGATg > 2:257042/1‑150 (MQ=255) cAAACAGGATGCAAAAAAAAACTGCCTTAGGGGG‑‑T‑TT‑TTTCATTTCTTCAGCTTCCATTTTTGTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCATCGATGAc < 1:1697572/150‑1 (MQ=255) aaaCATGATGCAAAAAAAAAGACCCATA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 1:988152/150‑1 (MQ=255) atgatgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg < 1:1587270/150‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 1:111815/150‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 1:1046689/150‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:3577720/1‑150 (MQ=255) atgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 2:3397525/150‑1 (MQ=255) atgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTCCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 1:354932/150‑1 (MQ=255) tgCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGGTGCCATACGCTcc > 2:3778928/1‑150 (MQ=255) gCATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCg < 2:902600/150‑1 (MQ=255) cATAAAAAAAGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc > 2:2227193/1‑150 (MQ=255) aaaaaaaGCCCCTTA‑‑GGGGTCTTT‑TTT‑TTTTCTCCAGCTTCCATTCTTTTACCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtg < 1:4057380/150‑1 (MQ=255) aaaaaaGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGGAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATTCGCTCCGCCtgt > 1:63216/1‑150 (MQ=255) aaaaaaGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCCCCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGCGGATCTGCTTCGATGGCATACGCTCCGCCtgt > 2:658073/1‑150 (MQ=255) aaaGACCCTTA‑‑GGGGTCTTT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:1187307/150‑1 (MQ=255) | GATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGG‑‑C‑TT‑TTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317009‑1317287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |