Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | BS168_reference_genome | 1,317,152 | +GT | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 1,317,152 | 1 | . | G | 97.3% | 274.0 / ‑4.2 | 75 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Reads supporting (aligned to +/- strand): ref base . (1/0); major base G (33/39); minor base T (0/2); total (34/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | BS168_reference_genome | 1,317,152 | 2 | . | T | 97.3% | 225.6 / NA | 75 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Reads supporting (aligned to +/- strand): ref base . (1/0); major base T (33/39); minor base A (0/2); total (34/41) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑G‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317017‑1317275 || gTTTGGTGCTCGGTGCGGTCGGGTTCAGCTTTACTCAGGGGATGGGTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAg‑g‑ggtc < 2:527004/139‑4 (MQ=255) cTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTAATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTAATATTGCGGCACGCAATAAAACATGATGCATAAAAAAAGACCCTTAG‑G‑G‑‑G‑TCttttttat > 6:167884/1‑137 (MQ=255) gTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGc > 4:461221/1‑139 (MQ=255) cGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCAT‑AAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTc < 4:409610/139‑1 (MQ=255) gggTTCAGCTTTTCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGCAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTc < 5:332399/139‑1 (MQ=255) gggTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTc < 6:208423/139‑1 (MQ=255) gTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCa < 1:413459/139‑1 (MQ=255) gTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCa < 6:177710/139‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGGAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCtttt < 7:99154/137‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTa > 6:317162/1‑138 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTAt > 7:331765/1‑139 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATc > 4:101786/1‑139 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTATTCAGCTTCCATTGATTTa > 2:500033/1‑137 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 4:349745/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 2:69534/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCa < 6:370184/139‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGAAGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 2:483040/137‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCa < 1:519614/123‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCa > 2:519614/1‑123 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCAtt < 4:517985/125‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCAtt > 3:517985/1‑125 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 8:343641/135‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 7:343641/1‑135 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAg < 6:460715/138‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAg > 3:26404/1‑138 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 1:408780/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 5:337262/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 5:455945/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTATTCAGCTTCCATTCTTTTATGGTCAGc > 5:460715/1‑139 (MQ=255) aTGGTTCATGCAGGTGAATCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 7:352893/138‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGAGGCACGCAATCAAACATGAAGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTATATTATAGTCAGCt > 5:483367/1‑137 (MQ=255) ttCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaag < 4:395459/139‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 4:209928/125‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 3:209928/1‑125 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 7:475386/1‑133 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc < 8:475386/133‑1 (MQ=255) gAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 3:183634/139‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg > 4:469651/1‑138 (MQ=255) gggAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATgg > 7:57750/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGC‑TCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 4:88822/1‑138 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 2:408780/138‑1 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 4:26404/138‑1 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGc > 8:125551/1‑139 (MQ=255) cATATTGCGGCACGAAAT‑AAAAATTAGTCATACAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTATATTATCGTCATCTCAGAAGATCCACTTGCCACCCGCGGATCCGCATGGCCGATTTCCGCt < 5:44288/138‑1 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGTG‑GTAT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGATCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 6:483367/138‑1 (MQ=255) ttttGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 1:500033/137‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 3:101786/139‑1 (MQ=255) ttGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt > 5:103122/1‑135 (MQ=255) ttGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 6:103122/135‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAACGGATCCGCATGGCCGATTTCCGCTGCctc > 2:29354/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa < 7:164246/96‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa > 8:164246/1‑96 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTGCGCTGCgtcgt > 3:86625/1‑137 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 8:57750/139‑1 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt > 8:7216/1‑139 (MQ=255) aTCAAAGATGATGCATAAAAACAGACCCTTAG‑GTGTAT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAt < 3:337205/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:243626/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 3:420341/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:404420/139‑1 (MQ=255) tgatgCATAAAAAAAGAAGCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTCTCGTCAGCTCAGAAGATCCACTTGCCACCAGCTGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:520184/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCCTGGCCGATTTCCGCTGCCTCTGCCAGTGAATCTGCTTCGa > 7:306623/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 8:41913/116‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc > 7:41913/1‑116 (MQ=255) gatgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 8:307887/1‑139 (MQ=255) atgCATAAAAACAGTCCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCATATCAGCAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTGGAt < 1:516913/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 1:175079/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGATTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa < 5:317162/138‑1 (MQ=255) tgCATAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 2:175079/1‑138 (MQ=255) aTAAAAAAAGACCCTTCG‑G‑GGTCTTTTTTATTGCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 4:237723/139‑1 (MQ=255) aTAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 2:69201/139‑1 (MQ=255) tAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCCCCAGCGGGTCCGCATGGCCGATTTCCGCTGCCTCGTGCAGGGAATCGGCTTCGATGACa > 2:180686/1‑138 (MQ=255) tAAAAAAAGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGATGCCTCTTCCAGTGAATCTGCTTCGATGACa > 2:21854/1‑138 (MQ=255) aaaaaaaGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATa > 2:401041/1‑139 (MQ=255) aaaaGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg > 4:480360/1‑138 (MQ=255) aaaGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGC‑TCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 3:88822/139‑1 (MQ=255) aaGACCCTTAG‑G‑GGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 1:18096/139‑1 (MQ=255) || GTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑G‑G‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317017‑1317275 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |