| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,695,562 | (A)7→8 | coding (309/627 nt) | fliH → | flagellar export apparatus subunit of cytoplasmic ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,695,555 | 1 | . | A | 94.7% | 529.5 / 17.9 | 152 | coding (302/627 nt) | fliH | flagellar export apparatus subunit of cytoplasmic ATPase |
| Reads supporting (aligned to +/- strand): ref base . (4/4); new base A (77/67); total (81/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 159 total aligned reads displayed.
GGCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAT > BS168_reference_genome/1695419‑1695684 | ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 4:384329/1‑138 (MQ=255)ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 6:419010/1‑138 (MQ=255)ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 5:3138/1‑138 (MQ=255) cAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑aaa > 6:145442/1‑138 (MQ=255) gCAATGAAACAGTATGCCGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTgg < 3:348371/139‑1 (MQ=255) tGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGgcag > 5:12964/1‑138 (MQ=255) tATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCt > 7:432774/1‑139 (MQ=255) tATGCAGAACTGATCGGCCAAGCAAACAGTAAAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTcg > 8:100566/1‑138 (MQ=255) tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtga > 3:451062/1‑139 (MQ=255) tGCAGAACTGATCGCCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGAA‑AAAAAAAGTTAGGCAGCAAAAGTCtca > 5:476060/1‑137 (MQ=255) cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgat < 3:505402/138‑1 (MQ=255) cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgat < 5:209378/138‑1 (MQ=255) aGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgatga > 2:109620/1‑139 (MQ=255) cTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATa > 7:151259/1‑137 (MQ=255) tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGACCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag > 8:409883/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 1:154753/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 7:289152/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:172686/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:174715/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:32340/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 3:162429/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 1:4647/1‑139 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTCGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTc < 4:55557/126‑1 (MQ=255) aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTCGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTc > 3:55557/1‑126 (MQ=255) cGGCCAAGCAAACAGTCTCACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTTCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGc < 8:300328/139‑1 (MQ=255) ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt < 6:254386/139‑1 (MQ=255) ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt < 1:109620/139‑1 (MQ=255) ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCttt > 6:526519/1‑139 (MQ=255) aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct < 5:145442/139‑1 (MQ=255) aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct < 6:269568/139‑1 (MQ=255) aaaCAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 8:432774/139‑1 (MQ=255) aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGCGGCTTTCCTCCTGCtt > 6:223028/1‑139 (MQ=255) aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtc > 4:241142/1‑130 (MQ=255) aaCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 6:12433/130‑1 (MQ=255) aCTGAAATTTCCATAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGATGAAATCGTTGATCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCTATAGTCTTATGATAAAGAGGCTTTCCTTCTGCTTGTacaac < 4:527129/139‑1 (MQ=255) aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaa < 2:4647/139‑1 (MQ=255) aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaa < 2:109239/139‑1 (MQ=255) cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGGTTTCCTCCTGCTTGTacaac < 7:457989/139‑1 (MQ=255) cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac < 6:3138/139‑1 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct > 4:126846/1‑125 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 3:126846/125‑1 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc > 3:272578/1‑127 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc < 4:272578/127‑1 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 7:70728/1‑139 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 8:276791/1‑139 (MQ=255) aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 6:289000/1‑139 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCt > 7:137474/1‑100 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAaga < 6:406799/111‑1 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac < 1:220427/134‑1 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGtt > 2:367447/1‑139 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 1:212117/1‑138 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 7:51632/1‑138 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 2:406081/1‑138 (MQ=255) aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTAGTACAACAGGTta > 3:527129/1‑139 (MQ=255) cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac > 4:319313/1‑129 (MQ=255) cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc > 5:39088/1‑139 (MQ=255) gAAAAGCTGGGGAGGACAAGCATGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg < 6:314873/139‑1 (MQ=255) gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGt > 8:368065/1‑138 (MQ=255) gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 3:57861/139‑1 (MQ=255) gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 3:191360/139‑1 (MQ=255) cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 5:516468/1‑138 (MQ=255) cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 6:17034/1‑138 (MQ=255) cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 7:174715/139‑1 (MQ=255) gTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAg > 7:121435/1‑139 (MQ=255) gAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc > 8:57166/1‑107 (MQ=255) gAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc < 7:57166/107‑1 (MQ=255) cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg > 8:29982/1‑123 (MQ=255) cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa > 6:462595/1‑139 (MQ=255) cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa < 5:247955/139‑1 (MQ=255) aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 3:260564/128‑1 (MQ=255) aGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACg < 5:289000/139‑1 (MQ=255) gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa > 3:237556/1‑126 (MQ=255) gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 4:237556/126‑1 (MQ=255) gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGa > 5:66907/1‑139 (MQ=255) aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata < 3:356921/138‑1 (MQ=255) aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata < 5:419010/138‑1 (MQ=255) cGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt < 8:485584/139‑1 (MQ=255) cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg < 4:98662/109‑1 (MQ=255) cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 8:314665/1‑114 (MQ=255) cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 7:314665/114‑1 (MQ=255) tGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGt < 1:367447/139‑1 (MQ=255) aagaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg < 5:257756/139‑1 (MQ=255) agaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGATGTGAAGGAATATGACGATATATCAATTTATGTTGa > 1:66520/1‑139 (MQ=255) gtaaTCGTTGAGCTTGCCGTTGCCCTAT‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGTCGATATATCAATTTATGTTGAt < 5:100772/137‑1 (MQ=255) gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 2:212117/139‑1 (MQ=255) gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 6:66907/139‑1 (MQ=255) gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 2:154753/139‑1 (MQ=255) gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTATGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 1:60845/139‑1 (MQ=255) aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag < 2:348260/62‑1 (MQ=255) aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag > 1:348260/1‑62 (MQ=255) aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCa > 3:189391/1‑139 (MQ=255) aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATAGCAATTTATGTTGATCCa > 2:157678/1‑139 (MQ=255) gTTGATCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 5:230057/139‑1 (MQ=255) gTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 7:307659/139‑1 (MQ=255) gTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 6:516468/139‑1 (MQ=255) gCTTGCCGTTGCACTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTa < 8:121435/139‑1 (MQ=255) tGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGTTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTAt > 5:387906/1‑137 (MQ=255) gCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa < 2:482952/84‑1 (MQ=255) tGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAt > 8:93449/1‑139 (MQ=255) cccTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt < 6:226905/107‑1 (MQ=255) | GGCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAT > BS168_reference_genome/1695419‑1695684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |