| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 4,206,747 | G→A | L138F (CTT→TTT) | parA ← | chromosome partitioning protein; transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 4,206,747 | 0 | G | A | 98.9% | 619.7 / ‑2.5 | 175 | L138F (CTT→TTT) | parA | chromosome partitioning protein; transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (112/60); total (114/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
Only 100 of 175 total aligned reads displayed.
ACCTTCAATCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAGGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGATCTCAGCCCC > BS168_reference_genome/4206619‑4206882 | acCTTCAATCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATc > 1:244849/1‑139 (MQ=255) cTTCAATCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGt > 2:161927/1‑139 (MQ=255) tCAATCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGt > 5:477866/1‑137 (MQ=255) aaTCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGc < 2:285684/139‑1 (MQ=255) aaTCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGc < 6:308742/139‑1 (MQ=255) aaTCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGc < 1:493986/139‑1 (MQ=255) ttCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGAcggcg < 1:510027/139‑1 (MQ=255) aaaTGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa < 5:225368/138‑1 (MQ=255) aaaTGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa < 7:55347/138‑1 (MQ=255) aaaTGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa < 7:119040/138‑1 (MQ=255) cTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGAcaatc < 8:353509/138‑1 (MQ=255) cTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGAAAAGGCATTAATCGTCAGCAAGCCCAAAGACGGCGGAcaatc > 3:274173/1‑138 (MQ=255) tttGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGAcaatcaat > 1:272833/1‑139 (MQ=255) caAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGataat < 7:328576/139‑1 (MQ=255) gACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGataatat > 7:96022/1‑138 (MQ=255) cGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGataatataat < 1:161927/139‑1 (MQ=255) aTTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa < 6:51841/112‑1 (MQ=255) aTTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa > 5:51841/1‑112 (MQ=255) tttAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAAtttt > 1:451940/1‑139 (MQ=255) tttAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCAGTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATATTATAATCATAAtttt > 4:137634/1‑139 (MQ=255) aCTGGCTGAGACCCTCCAAGGCATAATATTCGCAGTGTACAGGAATCACAACGGAAGCCTAGGCAGAAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCATTGATAATATAATAAAAATTTTGCTTTAc > 2:299295/1‑139 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACt > 7:82590/1‑139 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACt > 5:398246/1‑139 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACt > 4:61199/1‑139 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACt > 1:197350/1‑139 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCACACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTa < 8:499908/137‑1 (MQ=255) cTGGCTGAGACCCTCCAAGGCATAATATTCACACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTa > 7:499908/1‑137 (MQ=255) tGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAg > 8:335358/1‑83 (MQ=255) tCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGctc > 3:539595/1‑139 (MQ=255) ccAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGctct > 3:535699/1‑139 (MQ=255) ccAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGct < 3:472051/137‑1 (MQ=255) cAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGctctc > 2:239042/1‑139 (MQ=255) ataataTTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAATGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATTATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAt < 4:259653/139‑1 (MQ=255) taataTTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAtc > 8:103685/1‑139 (MQ=255) aataTTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAtct > 4:157622/1‑139 (MQ=255) aataTTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAtct > 7:200696/1‑139 (MQ=255) aataTTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAtct > 2:481983/1‑139 (MQ=255) atatTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAtct > 2:458001/1‑138 (MQ=255) atatTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGA‑AATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCa < 5:266069/139‑1 (MQ=255) cGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTtc > 5:528751/1‑139 (MQ=255) cGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGATCTCTTCAATCTCACTtc > 1:387080/1‑139 (MQ=255) aCTGTACTGGAATGACTCCGGATTCGCAGTCAGTAATGGCATTAATCGTCAGCATTCCCATTGACGGCGGACAATCTATGATAATTTAATAATAATTTTGCTTTACTGCTTCAAGCGCTCTATTCAATCTCACTTatct < 4:346767/139‑1 (MQ=255) cTGTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCtt < 6:456079/139‑1 (MQ=255) gTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCa > 5:378930/1‑129 (MQ=255) gTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCa < 6:378930/129‑1 (MQ=255) gTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGa > 4:44801/1‑139 (MQ=255) gTACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGACCAATGACGGCGGACAATCAAAGATAATATAATCATAATTTTGATATACTGCTTCAAGCGCTCTCTTCAATCACACTTATCTTGa > 3:346767/1‑139 (MQ=255) tACAGGAATCACAACGGAATCCGAGGCAGTAAGGGCATTAATCGTCAGCAAGCCCAATGACGGCGGTCAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGat > 6:479741/1‑139 (MQ=255) tACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGct < 4:451221/115‑1 (MQ=255) tACAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGa > 6:323898/1‑138 (MQ=255) cAGGAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGata < 3:215188/138‑1 (MQ=255) gAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATg > 1:314273/1‑71 (MQ=255) gAATCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTg > 8:126500/1‑138 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAgcg < 8:154516/105‑1 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAgcg > 7:154516/1‑105 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAAt > 5:131481/1‑116 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGata < 1:203601/132‑1 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGt > 2:200252/1‑136 (MQ=255) tCACAACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAg > 4:327575/1‑138 (MQ=255) cacaACGGAATCCGAGGCAGTAAAGGCATTAATTGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCCTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTGGATATTGTAgg > 7:375259/1‑138 (MQ=255) actaCGGAATCCGTGGCAGTAAAGTCATTAATCGTCAGCAAGCCCTATGACGGCGGACTATCAATGATAATATAATCATTATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa < 6:83226/136‑1 (MQ=255) acaACGGTATCCGAGGCAGTACAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTAGCTTTACTGCTTCAAGAGCTCTCTTCAATCTCAATTCTCTTGATAGTGTAGGaa > 8:1358/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGa > 3:450802/1‑57 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGAcaat < 4:394145/61‑1 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGAcaat > 3:394145/1‑61 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGataata > 7:384715/1‑72 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAGTTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 4:496072/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAgcgc > 4:514096/1‑104 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTc > 8:257117/1‑111 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTc < 7:257117/111‑1 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCa > 4:40649/1‑118 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTg < 7:29991/133‑1 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTg > 8:29991/1‑133 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 7:447616/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 7:6891/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 1:340245/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 6:367891/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 6:3565/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 2:332765/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 2:412099/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 5:352506/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 4:443164/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 4:221049/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 2:84862/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 3:478607/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 3:208442/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGATTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGaa > 3:413329/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATCACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTACACTCTCACTTCTCTTGATATTGTAGGaa > 6:484281/1‑139 (MQ=255) acaACGGAATCCGAGGCAGTAAAGGCATAAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTAAGCTTTACTGCTTCAAGCGCTCTCTTCAATCTAACTTCTCTGGATATTGTAGGa > 5:86556/1‑138 (MQ=255) gAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCt < 6:398246/139‑1 (MQ=255) gAATCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCt < 4:536111/139‑1 (MQ=255) aaTCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTc < 3:381222/139‑1 (MQ=255) tCCGAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCg > 2:271812/1‑138 (MQ=255) gAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGAtct < 5:445391/139‑1 (MQ=255) gAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGAtct < 8:61644/139‑1 (MQ=255) gAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGAtc > 7:289189/1‑138 (MQ=255) gAGGCAGTAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTCATATTGTAGGAACCAGCTCGAtct > 5:307363/1‑139 (MQ=255) gCAGTTAAGGCATTTATCGTGAGGAAGCCCAATGTCGGCGGACAATGAATGATATTATATTCATAATTTTGCTTTACTGCTTCATGCGCTCTGTTCTATCTCACTTCTCTTGATATTGTAGGAAGCAGCTCGATCTCAg < 1:412629/139‑1 (MQ=255) gCAGTAAAGGCATTAATCGGCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTTATATTGTAGGAACCAGCTCGATCTCAg < 2:451940/139‑1 (MQ=255) tAAAGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGATCTCAGcccc > 6:178219/1‑139 (MQ=255) | ACCTTCAATCATTAAATCAGTATTCAAATGCTTTTGCACAAGACGTACTGTATTTAATAACTGGCTGAGACCCTCCAAGGCATAATATTCGCACTGTACAGGAATCACAACGGAATCCGAGGCAGTAAGGGCATTAATCGTCAGCAAGCCCAATGACGGCGGACAATCAATGATAATATAATCATAATTTTGCTTTACTGCTTCAAGCGCTCTCTTCAATCTCACTTCTCTTGATATTGTAGGAACCAGCTCGATCTCAGCCCC > BS168_reference_genome/4206619‑4206882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |