| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 166,345 | Δ1 bp | intergenic (+17/‑155) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 166,344 | 0 | G | . | 98.9% | 165.2 / ‑3.2 | 91 | intergenic (+16/‑156) | trnI‑Ala/rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (44/46); total (45/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 102 total aligned reads displayed.
ACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAGGTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTAAAAA > BS168_reference_genome/166206‑166466 | aCCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCAGTTTTTTTGGGGCC‑TTAGCTCAGGTGGGAGGGCGCCTGCGTTGCCCGCAGGAGGTCTGCGGTTGGATCCCGCGAGGCGCCACCCCAAGGTTTGAAAAAAg > 6:27680/1‑139 (MQ=11) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGCCCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGCTCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 4:220810/1‑135 (MQ=12) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGCCCATTTTTTATGGGGCC‑TTAGCTCAGATGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATGCCGCTAGGAGACACCAAAAGTTTTTAAAAAAGGtat > 8:171085/1‑137 (MQ=11) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATTGGCCCGTTAGCTAAGAGGGGAGAGCGCCTGCTTTGCACGCAGGCGGTCCGCGGTCCGAACCCGCTAGGCGCCACAAAAATTTTTTAAAAAAgttg > 8:281517/1‑136 (MQ=1) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 1:112557/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 3:273308/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 3:13092/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 5:379861/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 7:158581/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 7:255824/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 8:257885/1‑135 (MQ=17) tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAgttat > 1:206340/1‑135 (MQ=17) gggTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTAtt < 5:118800/138‑1 (MQ=17) ggTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGa < 6:203223/139‑1 (MQ=17) ggTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGa < 1:213328/139‑1 (MQ=17) tCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACt < 6:388223/139‑1 (MQ=17) tCGCAGGTTCGAATCCTGTCTTCCCGACCATTGTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCCCGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACt > 4:166204/1‑139 (MQ=255) tCGCAGGATCGAATCCTGTCTTCCAGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGGCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACt < 6:122328/139‑1 (MQ=11) gCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACttt > 4:328640/1‑139 (MQ=17) cAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACttt > 7:21316/1‑138 (MQ=17) gTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTgaag < 7:103711/139‑1 (MQ=17) gTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCGGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTgaag < 6:40221/139‑1 (MQ=12) cGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGaagaag < 8:255824/139‑1 (MQ=17) cGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGaagaag > 8:179711/1‑139 (MQ=12) gAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGaagaag < 3:368167/138‑1 (MQ=17) aaTCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTg < 2:47163/139‑1 (MQ=17) aTCCTGTCTTCCCGACCATTTTTTATGGTGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGa < 4:6404/139‑1 (MQ=12) aTCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGa < 6:379861/139‑1 (MQ=17) cTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACa < 1:76934/138‑1 (MQ=18) cTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACa < 8:158581/138‑1 (MQ=18) gTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTg > 3:358731/1‑139 (MQ=21) tCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTga > 6:67119/1‑125 (MQ=17) tCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTga < 5:67119/125‑1 (MQ=17) tCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTg < 5:100660/132‑1 (MQ=17) tCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTg > 6:100660/1‑132 (MQ=17) cTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGGCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 3:43631/139‑1 (MQ=255) tCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACa > 5:375292/1‑132 (MQ=18) tCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACa < 6:375292/132‑1 (MQ=18) cccGACCATTTTTTCTGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 4:210831/136‑1 (MQ=255) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTg < 4:22932/128‑1 (MQ=17) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTg > 3:22932/1‑128 (MQ=17) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGtat < 6:289628/137‑1 (MQ=21) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGtat < 7:290739/137‑1 (MQ=21) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 4:358731/136‑1 (MQ=21) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 3:328640/136‑1 (MQ=21) cccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 5:393129/136‑1 (MQ=21) ccGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATAc > 4:121039/1‑138 (MQ=21) gACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACtaa > 5:309249/1‑139 (MQ=21) ttATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTg < 4:206689/138‑1 (MQ=11) ggCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTaa > 3:294681/1‑138 (MQ=11) gCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAAc > 1:195220/1‑138 (MQ=11) cc‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACaa < 7:263623/139‑1 (MQ=11) tAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta > 7:4004/1‑113 (MQ=11) cTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGa < 3:292441/139‑1 (MQ=11) aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGacaa < 2:112557/139‑1 (MQ=11) aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGaca > 8:216510/1‑138 (MQ=11) cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGacaaa > 2:76228/1‑138 (MQ=11) ggAGATCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGAcaaacaaa < 2:283123/139‑1 (MQ=2) agagCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGTGGACAAACAAAAt > 1:217217/1‑139 (MQ=2) agagCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAAt > 4:142515/1‑139 (MQ=11) gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGAGTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGAt > 6:365029/1‑139 (MQ=2) cgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATc > 2:174688/1‑139 (MQ=11) gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCt > 8:295442/1‑139 (MQ=11) tGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCttt > 2:29926/1‑138 (MQ=11) gCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta > 3:243448/1‑91 (MQ=9) gCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGta < 4:243448/91‑1 (MQ=9) cTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGaa < 4:294681/139‑1 (MQ=11) tGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGaaaa < 7:216510/138‑1 (MQ=11) tGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGaaaa < 8:21316/138‑1 (MQ=11) cACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGa < 3:342603/126‑1 (MQ=11) cACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGa > 4:342603/1‑126 (MQ=11) cACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTa < 7:295442/139‑1 (MQ=11) cGCAGGAGGTCAGCGGTTCGCTCCCGCTAGGCTCCACCAAAAGTTTTTAATAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTaaa > 4:76050/1‑139 (MQ=2) aggaggTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAAc > 2:83801/1‑137 (MQ=11) aggaggTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACAAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAATACTAAACac > 8:215593/1‑138 (MQ=2) gTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACAt < 2:43909/71‑1 (MQ=0) gTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACAt > 1:43909/1‑71 (MQ=0) gTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAACCAAGACa > 8:274482/1‑138 (MQ=2) gTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACa > 4:191563/1‑138 (MQ=11) gTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGAATTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACa < 1:76228/138‑1 (MQ=2) aGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAAc > 8:115800/1‑139 (MQ=11) cGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACg > 6:237045/1‑138 (MQ=11) cGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTAGTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAAAAAGACAAAACg > 2:358443/1‑138 (MQ=2) cGATCCCGCTAGGCTCCACCGAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTg > 6:188675/1‑139 (MQ=2) cGCTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAtt < 7:257885/139‑1 (MQ=11) cTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAtt > 2:57791/1‑137 (MQ=11) cTAGGCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAtt > 4:140488/1‑137 (MQ=11) cTAGGCACCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGAGACATAGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAtt > 5:24146/1‑137 (MQ=11) ggCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAg < 8:300185/137‑1 (MQ=11) ggCTCCACCAAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGtt > 5:326617/1‑139 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTc < 7:105995/130‑1 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTc > 8:105995/1‑130 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTa > 8:334028/1‑138 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTa > 7:262145/1‑138 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTa > 6:227262/1‑138 (MQ=11) caccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTa > 1:171418/1‑138 (MQ=11) ccaAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCTGACAAACAAAATGATCTTTGAAAGCTAAACAAGACAAACCGTACCTGTTAATTCAGTTTTTaaa > 8:241126/1‑138 (MQ=11) caAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTaaaaa < 7:115800/139‑1 (MQ=11) caAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTaaaaa < 4:150548/139‑1 (MQ=11) caAAAGTTTTTAAAAAA‑GTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTaaaaa < 2:195220/139‑1 (MQ=11) | ACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTTTATGGGGCC‑TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAAAAGTTTTTAAAAAAGGTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAGTTTTTAAAAA > BS168_reference_genome/166206‑166466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |