Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | BS168_reference_genome | 1,317,152 | +GT | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 1,317,152 | 1 | . | G | 96.1% | 182.0 / 0.4 | 51 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (22/27); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.16e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | BS168_reference_genome | 1,317,152 | 2 | . | T | 96.1% | 160.4 / 0.0 | 51 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (22/27); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.16e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317016‑1317275 || ggTGTGTTGCTCGTTGCGGGCGGGTTGAGCTTTACTCACGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGCAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAggggt < 7:4808/139‑3 (MQ=255) tgttgCTCGTTGCGGTCGGGTTCAGCGTTACTCAGGTGATGGGTCATGGAGGTGAAAAAGCAAACACAGAAGGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCGTAggggtcgtt > 2:315575/1‑133 (MQ=255) gttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑G‑t‑ctttt > 5:136691/1‑138 (MQ=255) tCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAAAAGCAAAAACAGAACGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑G‑T‑Cttttttatt > 7:109408/1‑136 (MQ=255) gCGGTCGGGGTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATttctt < 1:228686/138‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCtttt < 4:182649/137‑1 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCa < 8:73737/129‑1 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCa > 7:73737/1‑129 (MQ=255) cgcAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTATTCAGCTTCCATTCTTTTATc > 2:361441/3‑138 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 7:114082/137‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAATGGAAAACATTTCATATTGCGGCACGCAATCAATCATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTAATCGTCAGc > 5:160659/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCAAATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 4:109154/1‑139 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCATCTTCCAATCTTTTATAGTAAGCTc > 2:201770/1‑138 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCa < 1:201770/139‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCa < 4:47686/139‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 8:72253/1‑138 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 4:226223/1‑137 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCTTCAGCTCAGAAGATc > 5:289893/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 6:338441/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 6:332782/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGGACGCAATCAATCATGATGCATAAAAAAAGACCCTTAGGGGTC‑TGTTTTATGGCTTCAGCTTCCAGTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 3:354129/1‑139 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 5:262916/138‑1 (MQ=255) aCAGCAAACACAGAAGTGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc < 5:370283/139‑1 (MQ=255) aCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCATCTCAGAAGATCCACTTGccacc < 1:301606/139‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 7:146740/1‑138 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg < 7:318026/139‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 5:126790/130‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg > 6:126790/1‑130 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 3:226223/139‑1 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTAAGAAGATCCCCATGACACCCGCTGATACGCAATGCCGCTATCCg > 2:152306/1‑139 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCGCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 1:152306/139‑1 (MQ=255) atatTGCCGCACGCAATCTAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 1:270087/138‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 5:12476/139‑1 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 2:219851/133‑1 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt > 1:219851/1‑133 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 3:83527/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 5:332782/138‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 5:338441/138‑1 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 6:272257/1‑72 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 5:272257/72‑1 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAt < 7:55287/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 8:146740/138‑1 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 4:384236/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 8:109408/139‑1 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 3:103805/114‑1 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc > 4:103805/1‑114 (MQ=255) cATAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGa > 5:133739/1‑138 (MQ=255) tAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 6:231204/1‑138 (MQ=255) tAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 1:20989/1‑138 (MQ=255) tAAAAAAAGACCCTTAGGGGTCTT‑TTTTATTTATTCAGCTTCCATTGTTTTATCGTCAGCTCAGAAGATCCCCTTGCCCCCCGCGGCTCCCCCTGGCCGAGTTCCGCGGCCGCGTGCAGGTAATCAGCTTGGATGGCa > 2:191664/1‑138 (MQ=255) aaaaGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGCTCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 6:113479/139‑1 (MQ=255) aaaaGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 8:35165/139‑1 (MQ=255) aaGACCCTTAGGGGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 2:285185/139‑1 (MQ=255) || GGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317016‑1317275 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |