| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | BS168_reference_genome | 1,716,709 | Δ24 bp | coding (217‑240/765 nt) | sigD → | RNA polymerase sigma‑28 factor (sigma‑D) |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 1716709 | 1716732 | 24 | 43 [0] | [0] 43 | sigD | RNA polymerase sigma‑28 factor (sigma‑D) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | = 1716708 | 0 (0.000) | 43 (0.570) | 26/246 | 0.9 | 100% | coding (216/765 nt) | sigD | RNA polymerase sigma‑28 factor (sigma‑D) |
| ? | BS168_reference_genome | 1716733 = | 0 (0.000) | coding (241/765 nt) | sigD | RNA polymerase sigma‑28 factor (sigma‑D) | |||||
AATGCGCCGTTACATGCCGCTTGTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/1716573‑1716708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGTATCTTCGG > BS168_reference_genome/1716733‑1716864 AATGCGCCGTTACATGCCGCTTGTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTAC > 8:79538/1‑139 CGCTTGTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCG > 3:177483/1‑139 CTTGTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGATCATTTGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTtcgc > 5:279/1‑135 GTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGG < 2:229411/137‑1 taACATATAATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGAATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG < 5:333341/136‑1 gCACATATCATGTAGGCATAATTTCTGTCGGACTGCAGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG < 6:199920/137‑1 TCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG < 7:313095/138‑1 ATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAAT > 5:346940/1‑138 TGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTTGTTTAGAATTCGCGGCGCAATCATAGAC > 1:38134/1‑139 TGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG > 1:113952/1‑128 TGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG < 2:113952/128‑1 GGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGC > 8:324468/1‑139 GGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGGTTAGAATTCGCGGCGCAATCATAGACGGGC > 1:161115/1‑139 GGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTGCGTAAAGAAGATT > 6:41001/1‑139 ACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGG < 7:79538/139‑1 ACTGCCGAAATCAGTCCATAAACACTATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGG < 2:375147/139‑1 TGCATAGAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCACTACGCCTCGTTTAGAATTCGCGGCGAAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTC > 7:157596/1‑139 TGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTC > 1:245802/1‑139 ATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAA > 7:354577/1‑138 ATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGG > 1:130252/1‑113 ATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGG < 2:130252/113‑1 ATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAA < 2:245802/138‑1 GCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGT > 4:232488/1‑139 CTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTT > 3:310738/1‑138 TGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTTGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAG < 2:38134/138‑1 GGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGC > 3:5646/1‑131 GGTTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGC < 4:5646/131‑1 TTTATATGATGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCCATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGA > 5:227652/1‑138 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAA > 5:345126/1‑139 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAA > 7:85899/1‑139 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAA > 7:359260/1‑139 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG < 5:390296/47‑1 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCG > 6:390296/1‑47 TGCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAAATCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAA < 2:30720/139‑1 GCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAA > 8:221705/1‑138 GCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAA > 4:368377/1‑108 GCCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAA < 3:368377/108‑1 CCCTTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTCAAAAGCTTGAAC < 4:177483/138‑1 TTGAAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCG > 2:141783/1‑139 AAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGT < 7:324468/138‑1 AAAAATTTGACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGT < 2:161115/138‑1 GACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGTATCTTCGG < 4:310738/138‑1 GACCCCTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGTATCTTCGG < 8:359260/138‑1 AATGCGCCGTTACATGCCGCTTGTCACATATCATGTAGGCAGAATTTCTGTCGGACTGCCGAAATCAGTGCATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCTTGAAAAATTTGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/1716573‑1716708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTACGCCTCGTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAAGCTTGAACAGCGGTATCTTCGG > BS168_reference_genome/1716733‑1716864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |