New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	pSIJ663_pHT315_araE_xy	= 5551	44 (0.010)	7226 (1.060)	205/244	0.0	99.4%	intergenic (+820/–)	ampR/–	–/–
	?	pSIJ663_pHT315_araE_xy	9889 =	NA (NA)					intergenic (+5158/–)	ampR/–	–/–

AAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAG  >  pSIJ663_pHT315_araE_xy/9751‑10021                                                                                                                                           |                                                                                                                                     cactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAtgtg                                                                                                                                      >  8:229174‑M2/31‑139 (MQ=255)    tcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg                                                                                                                                   >  4:166065‑M2/28‑139 (MQ=255)    tcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg                                                                                                                                   >  4:79292‑M2/28‑139 (MQ=255)    tcttttgaaagtgtgtaaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATCTGATTTGTCATTTTGATCTCATctgcac                                                                                                                                   >  6:13868‑M2/28‑137 (MQ=255)             agtttgttaaattatcagTGACATGAACTGAAGTATTTTAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                                                                                                                          <  2:210516‑M2/121‑1 (MQ=255)              gtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTgg                                                                                                                         <  6:104313‑M2/122‑1 (MQ=255)              acaTTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTgg                                                                                                                         >  6:199565/1‑139 (MQ=255)                gtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg                                                                                                                       >  1:268689‑M2/16‑139 (MQ=255)                gtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg                                                                                                                       >  6:163267‑M2/16‑139 (MQ=255)                gtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg                                                                                                                       >  5:9942‑M2/16‑139 (MQ=255)                   ttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcggc                                                                                                                     <  3:176115‑M2/126‑1 (MQ=255)                   ttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt                                                                                                                    <  7:36109‑M2/127‑1 (MQ=255)                      aattatcagTGACATGAAAGGATGTATTTAAAAATCAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTa                                                                                                                  <  6:49819‑M2/129‑1 (MQ=255)                         tatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt                                                                                                              >  5:49819‑M2/7‑139 (MQ=255)                          atcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt                                                                                                              <  7:3332‑M2/133‑1 (MQ=255)                           tcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAt                                                                                                            >  8:45139‑M2/5‑139 (MQ=255)                                 aCATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAt                                                                                                            <  4:101827/133‑1 (MQ=255)                                 aCATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAt                                                                                                            >  3:101827/1‑133 (MQ=255)                                     gAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGaca                                                                                                  >  3:873/1‑139 (MQ=255)                                      aaaGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCATATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTGGGCGGCTTATTGTATGGCTATGaca                                                                                                  <  3:171574/138‑1 (MQ=255)                                      aaaGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGaca                                                                                                  <  5:163267/138‑1 (MQ=255)                                      aaaGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGaca                                                                                                  <  7:43085/138‑1 (MQ=255)                                             gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                                                                                                                          <  2:210864/107‑1 (MQ=38)                                             gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                                                                                                                          >  1:210864/1‑107 (MQ=38)                                             gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATCTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGt                                                                                           >  7:186527/1‑138 (MQ=37)                                                tttGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAt                                                                                                            >  5:320365/1‑118 (MQ=34)                                                tttGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTAt                                                                                                            <  6:320365/118‑1 (MQ=34)                                                tttGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGACATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGAtt                                                                                       >  6:47372/1‑139 (MQ=18)                                                                                                                                     acttgggcggcgGGGGTTGGCGGGTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCCTCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCCAGCATTATGATTggag  <  2:253629/133‑1 (MQ=1)                                                                                                                                     acctgggcggcgGGGCGTGGCGGCTGATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGCAAGCTTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTggag  <  2:173724/133‑1 (MQ=1)                                                                                                                                     acctgggcggagCGGCATGGCGGCTTATTGTACGGCTATGACACGGCAGAGACTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGCGACTTGTCATTTCAAGCATTATGATTggag  <  2:295409/133‑1 (MQ=1)                                                                                                                                           |                                                                                                                                     AAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAG  >  pSIJ663_pHT315_araE_xy/9751‑10021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.