| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP006881 | 1,659,714 | Δ771 bp | [U712_08530]–[U712_08535] | [U712_08530], [U712_08535] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 1659714 | 1660484 | 771 | 43 [2] | [0] 41 | [U712_08530]–[U712_08535] | [U712_08530],[U712_08535] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | = 1659713 | 2 (0.030) | 41 (0.660) | 31/250 | 0.5 | 97.6% | coding (799/1317 nt) | U712_08530 | Flagellum‑specific ATP synthase |
| ? | CP006881 | 1660485 = | 0 (0.000) | coding (252/444 nt) | U712_08535 | Flagellar FliJ protein | |||||
GCCAGCATTAATGAGATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1659586‑1659713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTTGAAGATAAAGCTG > CP006881/1660485‑1660618 GCCAGCATTAATGAGATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCA > 2:135783/1‑139 AGCATTAATGAGATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTA < 1:135783/139‑1 TTAATGAGATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAA < 3:138517/139‑1 ATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGTGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAAT > 4:72794/1‑138 gctACTGAAATTGCAGAGTAATTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAG > 2:245547/4‑138 GCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAG > 7:297119/1‑138 CGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 1:29993/1‑138 CGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 8:119859/1‑138 CGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 3:339914/1‑138 CGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGAGGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 5:114783/1‑138 CGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTAGGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 7:72120/1‑138 CAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGAGTCTGTGACACGGGTGGCAATGGCGCGGCGAGAGAAAAGCTTGTCATGATGAAAAGACTTCAAATGAAGCATAAACAAGAAATTTT > 8:74420/1‑138 AATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGA < 7:119859/139‑1 GAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGTAATTTTGACAGAGAA < 7:6994/139‑1 GTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAA > 3:194591/1‑138 AAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAA < 4:194591/139‑1 GTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGC > 2:283259/1‑139 TATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGT > 3:142667/1‑138 ATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTG > 3:81480/1‑138 ATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA < 4:281366/88‑1 ATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGA > 3:281366/1‑88 TGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAA < 7:292270/139‑1 GATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAAC < 1:12656/138‑1 GATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAAC < 1:114553/138‑1 GATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAA > 5:74209/1‑137 TTACAAGGGTGGCAATGGTGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAA < 3:72794/138‑1 TTACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAA > 7:351909/1‑138 ACAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAAT > 7:223144/1‑139 CAAGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATG > 8:277957/1‑139 AGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTT < 6:74209/139‑1 AGGGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTT > 8:4457/1‑139 GGTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTG < 1:70712/139‑1 GTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAGCAAGAAATTTTGACAGAGAAAAGCATTGAAGTGAAAAAGTTTGATAAAATGCGTTAAAAACTGTTTAAAATCTTTGa > 2:76803/1‑138 GTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGC > 5:52423/1‑139 GTGGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGC > 5:110263/1‑139 GGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTC > 1:62229/1‑139 GGCAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTC > 3:301387/1‑139 CAATGGCGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTT < 3:74524/139‑1 CGCAGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTTGAAGA > 6:233574/1‑138 AGCGAGAGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTTGAAGATA > 2:114128/1‑137 AGAAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTTGAAGATAAAGCTG > 8:244678/1‑137 GCCAGCATTAATGAGATTGAAAGCGGCATATACAGCGACTGCAATTGCCGAGTATTTCCGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGTGGCAATGGCGCAGCGAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1659586‑1659713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAGCTTGTCATTATGAAAAGAAATCAAATGAATCAAAAACAAGAAATTTTGACAGAGAAAAACATTGAAGTGAAAAAGTTTGAAAAAATGCGTGAAAAACAGTTTAAAATGTTTGCTCTTGAAGATAAAGCTG > CP006881/1660485‑1660618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |