| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 3304613 = | 2 (0.030) | 26 (0.010) +ACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAG |
20/152 | 0.4 | 90.6% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 7 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
GGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT > pSIJ663_pHT315_araE_xy/9646‑9913 | gtttgaaatcatcgctgacgtttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGAc < 3:184641‑M2/4‑1 (MQ=255) tttgaaatcatcgctgacgtttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacaatcttttgaaagtgtgttaaattatcagTGACa > 3:44546‑M2/135‑139 (MQ=255) aCGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACAt > 7:105692/1‑138 (MQ=255) aaatcatcgctgacgtttggaaaaacagatatcagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgaccctctgttgaaagtgtgttaaattatcagTGACATGa > 3:122149‑M2/131‑138 (MQ=255) aatcatcgctgacgtttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGaaa < 6:123439‑M2/10‑1 (MQ=255) atcgctgacgtttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAgg > 4:299119‑M2/126‑137 (MQ=255) atcgctgacgtttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAgg > 3:77177‑M2/126‑137 (MQ=255) tttggaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGaaa < 2:169861‑M2/24‑1 (MQ=255) gaaaaacagataacagctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATg < 4:308795‑M2/27‑1 (MQ=255) gcgcAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAc < 8:105692/139‑1 (MQ=255) ctataaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTc > 8:9974‑M2/96‑138 (MQ=255) taaaaaaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAAtt < 8:59165‑M2/47‑1 (MQ=255) aaagcaatgtagcggggagacccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAAc > 4:125394‑M2/88‑139 (MQ=255) atgtaggggggacacccatacattgctttttactgcgtaaatccacgttgacaatattttgaatgtttgttaaattatcagTGACATGAAAGGAAGTATTTTAAAATGAAGAATACTCCAACTCAATTAGAACCAAATg < 2:132489‑M2/58‑1 (MQ=255) agacccatacattgatttttactgcgtcaatacacgtttacagtctttttaaagtgtgttaaattttcagTGAAATGAATGTAAGTATTTGAAAATCAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACa < 4:336051‑M2/69‑1 (MQ=255) ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAgg > 8:92717/1‑81 (MQ=255) ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAgg < 7:92717/81‑1 (MQ=255) ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATg < 5:59269/127‑1 (MQ=255) ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATg > 6:59269/1‑127 (MQ=255) acccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAAc > 7:53217‑M2/69‑136 (MQ=255) acccatacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAAc > 3:116238‑M2/69‑136 (MQ=255) tacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGc > 6:138956‑M2/64‑138 (MQ=255) tacattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGc > 5:174645‑M2/64‑138 (MQ=255) acattgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCa > 6:105005‑M2/63‑139 (MQ=255) tgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGt < 2:189469‑M2/65‑1 (MQ=255) tgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGt > 1:189469‑M2/59‑123 (MQ=255) tgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc > 8:94122‑M2/59‑138 (MQ=255) tgctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAAGACTCCATCTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc > 3:330705‑M2/59‑138 (MQ=255) gctttttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCaa > 8:24115‑M2/58‑139 (MQ=255) tttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATgg > 4:127404‑M2/54‑138 (MQ=255) tttactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATgg > 1:220430‑M2/54‑138 (MQ=255) tactgcgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTTGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGAt > 8:27807‑M2/52‑139 (MQ=255) cgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGCCATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGt > 5:105336‑M2/47‑138 (MQ=255) cgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTg < 5:105005‑M2/91‑1 (MQ=255) cgtcaatacacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGt > 1:142654‑M2/47‑138 (MQ=255) cacgttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAt < 7:94122‑M2/101‑1 (MQ=255) gttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAtctc > 8:348242‑M2/36‑139 (MQ=255) ttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAtc > 7:106054‑M2/35‑136 (MQ=255) ttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAtc < 8:106054‑M2/102‑1 (MQ=255) ttgacactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCa > 5:190532‑M2/35‑139 (MQ=255) acactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATCCTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAtgt > 6:22949‑M2/32‑139 (MQ=255) acactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACaagaag > 4:309787‑M2/32‑105 (MQ=255) acactcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAACAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACaagaag < 3:309787‑M2/74‑1 (MQ=255) tcttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg > 7:214928‑M2/28‑139 (MQ=255) ttttggaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGAAACAAGAAGCATTGCAAGGGTATTTGTCATTTTGTTCTCATGTggggcg > 4:37094‑M2/26‑139 (MQ=255) ttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcggcg > 3:339460‑M2/26‑139 (MQ=255) ttttgaaagtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcggcg > 1:157546‑M2/26‑139 (MQ=255) ttttacagtgtgttaaattatcagTGACATCAACGGAAGTATTTGAAACTGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGGCATTTTGATCTCATGTgcggcg < 4:330705‑M2/114‑1 (MQ=255) agtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg < 6:190532‑M2/121‑1 (MQ=255) tgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggc < 1:1717‑M2/123‑1 (MQ=255) gtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGACCCAAATGTTCCTGTAACAAGAAGCCATACAATGGGATTTGTCATTTTGATCTCATGTGCGCCGGGGCTTggcg > 8:301801‑M2/16‑139 (MQ=255) gtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg > 8:140391‑M2/16‑139 (MQ=255) tgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAGCTCAGGTGCGGCGGGGCTTggcgg > 2:134965‑M2/15‑139 (MQ=255) ttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt < 8:214928‑M2/127‑1 (MQ=255) taaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTTGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt < 7:27807‑M2/127‑1 (MQ=255) aattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTa < 2:220430‑M2/129‑1 (MQ=255) atcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt < 4:339460‑M2/133‑1 (MQ=255) aattttGAAATGAAAGTAAGAATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt < 4:142498/135‑1 (MQ=255) agTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt < 4:133916‑M2/127‑1 (MQ=255) agTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt > 3:133916‑M2/3‑129 (MQ=255) | GGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGT > pSIJ663_pHT315_araE_xy/9646‑9913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |