BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,391,818	G→A	S65F (TCT→TTT)	U712_17420 ←	Thioredoxin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,391,818	0	G	A	98.7%	517.0 / ‑2.3	152	S65F (TCT→TTT)	U712_17420	Thioredoxin reductase
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (78/71); total (79/73)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01

Only 100 of 152 total aligned reads displayed.

ATGACAGCACGGGCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAGAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGATGTGTATACAGCGGCC  >  CP006881/3391686‑3391952

atgaCAGCACTGTCTTTATATTCCTTTGAATCATCTTTGAATACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCt                                                                                                                                  <  8:370293/139‑1 (MQ=255)

atgaCAGCACGGGCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCt                                                                                                                                  <  1:230912/139‑1 (MQ=255)

     aGCACGGGCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAGAAAGCTCAGGc                                                                                                                             >  6:34020/1‑139 (MQ=255)

       cACGGGCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAA‑TTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGccc                                                                                                                           >  1:366701/1‑138 (MQ=255)

          gggCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAg                                                                                                                        >  7:99906/1‑139 (MQ=255)

            gCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGa                                                                                                                      <  6:446016/139‑1 (MQ=255)

                    ttCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTc                                                                                                               <  4:119981/138‑1 (MQ=255)

                      ccTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCACGGATACTTTCg                                                                                                              >  6:261048/1‑137 (MQ=255)

                      ccTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGaa                                                                                                            >  8:129367/1‑139 (MQ=255)

                      ccTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGaa                                                                                                            >  7:105080/1‑139 (MQ=255)

                          tGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATc                                                                                                          <  4:418928/137‑1 (MQ=255)

                          tGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCACTTTAATATCGCCAAAAGCGAATTCAGCGCCGAATGTTTTCGCCTGTTCAAACATTTTTTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATc                                                                                                          >  1:360029/1‑137 (MQ=255)

                            aaCCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAg                                                                                                       >  2:298529/1‑138 (MQ=255)

                            aaCCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAA‑TTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     <  7:48766/139‑1 (MQ=255)

                             aCCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATGAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     <  7:347357/139‑1 (MQ=255)

                             aCCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     <  7:110458/139‑1 (MQ=255)

                                 gCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGt                                                                                                 >  8:117490/1‑139 (MQ=255)

                                 gCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGt                                                                                                 >  1:322227/1‑139 (MQ=255)

                                 gCTTTGACTACTTTGTACTCTTTGCCGTCAAAGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGt                                                                                                 >  5:28822/1‑139 (MQ=255)

                                            tttGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     <  3:71085/124‑1 (MQ=255)

                                            tttGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCt                                                                                      >  8:195624/1‑139 (MQ=255)

                                            tttGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCt                                                                                      >  7:255814/1‑139 (MQ=255)

                                            tttGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCt                                                                                      >  7:95239/1‑139 (MQ=255)

                                             ttGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGGATTCTACATCt                                                                                      >  1:149341/1‑138 (MQ=255)

                                              tGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCtt                                                                                     <  4:405007/138‑1 (MQ=255)

                                                  ctctTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTa                                                                                <  1:430113/139‑1 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATa                                                                                                   >  7:4011/1‑117 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCt                                                                                            >  1:290935/1‑124 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCt                                                                                            <  2:290935/124‑1 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  5:449937/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  7:206496/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  3:129081/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  3:419782/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  2:365677/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  4:140704/1‑139 (MQ=255)

                                                     tttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTg                                                                             >  1:58126/1‑139 (MQ=255)

                                                      ttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTAc                                                                                          <  1:444947/125‑1 (MQ=255)

                                                      ttGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTAc                                                                                          >  2:444947/1‑125 (MQ=255)

                                                          cGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCAt                                                                        >  3:357586/1‑139 (MQ=255)

                                                                   ccTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGcc                                                               <  6:145307/139‑1 (MQ=255)

                                                                      ctTTAATATCGCCATAAGCGTATTCAGCTCCGAATTTTTTAGCGTGTTCAAACATTTTTTTAAAAAGCTACGGCCCAAGGAAACTTTAGAATCCAGGCAAGTTTTCTACATATTCCGTATTGGCAATTTTTCCGcgat                                                             >  4:7269/1‑135 (MQ=255)

                                                                           atatCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGACATTTGTCCGCCAGGAATTc                                                       >  1:179064/1‑139 (MQ=255)

                                                                            tatCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTcc                                                      >  3:124795/1‑139 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGATTTTTTTGGCGTGTTGAAAAATTTTGTTTAAAAGCAGAGGCCCCAGGATTCTTTAGAATACCGGATAGTTTTCTACATCTTCGGTATTTGCCATTTGTACGCCAGGAATTccgattt                                                 >  2:232324/1‑134 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGATTTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCttt                                                 >  4:72819/1‑139 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCttt                                                 >  5:407494/1‑139 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCtt                                                  >  5:157738/1‑138 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCtt                                                  >  2:380786/1‑138 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGACATTTGTCCGCCAGGAAGTCCTCgtt                                                 >  8:144867/1‑139 (MQ=255)

                                                                                 ccATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATATTCCGTATTGGGCATTTGTCCGGCAGGAATTCCTCttt                                                 >  1:220018/1‑139 (MQ=255)

                                                                                   aTAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAGAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCa                                               <  5:34020/139‑1 (MQ=255)

                                                                                   aTAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCa                                               <  1:298529/139‑1 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGccc                                                                                                                           >  8:326313/1‑54 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGccc                                                                                                                           <  7:326313/54‑1 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGc                                                                           >  7:299071/1‑102 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGc                                                                           <  8:299071/102‑1 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  8:7160/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  1:187475/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  5:363249/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  4:121938/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  5:179503/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAAt                                      >  5:181307/1‑139 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCGTGTACAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCTGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTatt                                      >  6:310893/1‑137 (MQ=255)

                                                                                            ttCAGCGCCGAATTTTTTCGCCTGTTCAAACATTTTGTTAAAAAGCACAGGCCCAAGGATACTTTAGAATCCAGCATAGTTTTCTACATCTTCCGTATTGGGCATTTGGCCGCCAGGAATTCCTCATTCACtaattaat                                      >  2:310781/1‑139 (MQ=255)

                                                                                                gcgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCt                                                                                      >  1:454863/1‑87 (MQ=255)

                                                                                                gcgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCt                                                                                      <  2:454863/87‑1 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTTAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTAAATCTTCCGTATTGGCAATTTTTCAGCCAGGAATTCCTATTTCAATAATTAATGTGGa                                 >  8:406003/1‑139 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     >  4:436919/1‑71 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGa                                                                                                     <  3:436919/71‑1 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCtt                                                                                     <  8:69760/87‑1 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCttt                                                 <  7:52307/123‑1 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGa                                 >  7:273712/1‑139 (MQ=255)

                                                                                                 cgcCGAATTTTTTCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGa                                 >  5:253681/1‑139 (MQ=255)

                                                                                                       aTTTTTTCGCGTGTTCAATCATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAAtt                           <  1:310781/139‑1 (MQ=255)

                                                                                                             tCGCGTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGctc                      <  6:28822/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  3:205804/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  8:255814/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  7:250275/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  4:423825/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  2:187475/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  6:198943/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTATCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  6:363249/138‑1 (MQ=255)

                                                                                                               gcgTGTTCAAACATTTTCTTAAAAAGCTCAGGCCGAAGGATACTTTCGAATCCAGGATAGTATTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  3:7269/138‑1 (MQ=255)

                                                                                                                 gtgtTCAATCATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCTTTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  3:18774/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTATAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  8:376651/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  1:152003/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  7:195624/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  6:179503/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  6:157738/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  4:129081/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  2:322227/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  2:272951/139‑1 (MQ=255)

                                                                                                                 gtgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAt                 <  2:168659/139‑1 (MQ=255)

                                                                                                                 gtgtGCAAACATTATGTTAAAAACCTCACGCCCAACGCTACTTTCGAATCCAGGATAGCTTTCTACATCATCCGGATTGGCCCTTTGTCCGCCACGAATTCCTCTTTCAATCATTAATGTCGATACATTCGCTCTTGAt                 <  2:382695/139‑1 (MQ=255)

                                                                                                                  tgtTCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGAtg                <  3:234689/139‑1 (MQ=255)

                                                                                                                    ttCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    >  7:416047/1‑133 (MQ=255)

                                                                                                                    ttCAAACATTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCtt                    <  8:416047/133‑1 (MQ=255)

                                                                                                                           aTTTTGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGATGTGTATACAg       <  8:95239/139‑1 (MQ=255)

                                                                                                                               tGTTAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGATGTGTATAAAGCGGc   >  7:345364/1‑139 (MQ=255)

                                                                                                                                 ttAAAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGATGTGTATACAGCGGcc  <  8:273712/138‑1 (MQ=255)

ATGACAGCACGGGCTTTATATTCCTTTGAACCAGCTTTGACTACTTTGTACTCTTTGCCGTCAATGACCTCTTTAATATCGCCATAAGCGTATTCAGCGCCGAATTTTTTCGCGTGTTCAAACATTTTGTTAGAAAGCTCAGGCCCAAGGATACTTTCGAATCCAGGATAGTTTTCTACATCTTCCGTATTGGCCATTTGTCCGCCAGGAATTCCTCTTTCAATCATTAATGTCGATAAATTCGCTCTTGATGTGTATACAGCGGCC  >  CP006881/3391686‑3391952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`