BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	= 2228918	66 (0.840)	37 (0.020)	22/250	1.6	35.9%	intergenic (‑170/‑36)	U712_11195/U712_11200	Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase
*	?	pSIJ663_pHT315_araE_xy	9781 =	NA (NA)	37 (0.020)	22/250	1.6	35.9%	intergenic (+5050/–)	ampR/–	–/–

Only 100 of 2432 total aligned reads displayed.

GCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGC  >  pSIJ663_pHT315_araE_xy/9643‑9918

 cTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACTAGTATTTCCGACACATTTAAAATGAAGttt                                                                                                                                            >  8:224174/1‑138 (MQ=255)

 cTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGttt                                                                                                                                            <  1:10062/138‑1 (MQ=255)

 cTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGttt                                                                                                                                            >  2:307054/1‑138 (MQ=255)

 cTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGttt                                                                                                                                            >  5:281366/1‑138 (MQ=255)

           aGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAgg                                                                                                                                 <  5:143201/139‑1 (MQ=255)

            ggTTTCACGACTGGAAAGCGTGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCTCTCATTAGGCACCCCAGGCGTTATTATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAgg                                                                                                                                 <  8:177030/138‑1 (MQ=38)

                  ccGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTAtt                                                                                                                          <  4:168861/139‑1 (MQ=255)

                  ccGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTAtt                                                                                                                          <  6:285931/139‑1 (MQ=255)

                          aaaGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAAGGAAGTTTGACATGAAAGGAAGTATTTGAAAATg                                                                                                                  <  6:73954/139‑1 (MQ=255)

                           aaGCGGGCTGGGAGCGCAACGCAATTAATGTGAGGTAGCTAACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTTACAAGTATTTCCGACACATTTAAAAGGAAGTTTGACATGAAAGGACGTATTTGAAAATg                                                                                                                  <  8:205044/138‑1 (MQ=38)

                             gCGGGCAGGGAGCGCAACGCATTTATTGTGATTTCGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGAAAGCTTGACAAGTATTTCCGACACATTAAAAATGAAGTTTGACATCAAAGGAAGTTTTTGAAAATgacg                                                                                                               <  6:270183/139‑3 (MQ=37)

                               gggCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTTACATGAAAGGAAGTATTTGAAAATgaagaa                                                                                                             <  6:327995/139‑1 (MQ=255)

                                    gTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTc                                                                                                        <  1:294833/139‑1 (MQ=255)

                                       aGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCaa                                                                                                     >  1:41495/1‑139 (MQ=255)

                                            aacgcaaTTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCaa                                                                                               >  7:349510/1‑139 (MQ=255)

                                             acgcaaTTAATGTTAGTTAGCTCACTCATTAGGCACCCCAGGGGTTAAGATGGCAAGCTTGACAAGTATTTCCTACACATATAAAATGAAGTTTCACATGAAAGGAAGTATTTTAAAATGAAGAATACTCCAAC‑TCAAt                                                                                              <  7:324360/139‑1 (MQ=38)

                                              cgcaaTTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATgaagaa                                                                                                             >  1:123628/1‑124 (MQ=255)

                                              cgcaaTTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAAtt                                                                                             >  7:253858/1‑139 (MQ=255)

                                                 aaTTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATCAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTact                                                                                          <  5:121173/139‑3 (MQ=255)

                                                   ttAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTTCAAC‑TCAATTAGAAc                                                                                        >  6:186043/1‑139 (MQ=255)

                                                   ttAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAAc                                                                                        >  4:127798/1‑139 (MQ=255)

                                                        gtgAGTTAGCGCTCTCATTAGGCACCCCAGGCGTTAAGATGGAAATCTTGACAACTATTACCTACACATATAAAATGAAGTTTCACATGAATGGATTTATTTTAAAATGAACAATACTCCAAC‑TCAATTAGAACCaaa                                                                                    <  6:354369/138‑1 (MQ=255)

                                                           aGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGtt                                                                                >  3:179914/1‑139 (MQ=255)

                                                           aGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGtt                                                                                >  3:47660/1‑139 (MQ=255)

                                                           aGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGtt                                                                                >  1:179955/1‑139 (MQ=255)

                                                           aGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGtt                                                                                >  5:323672/1‑139 (MQ=255)

                                                           aGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGt                                                                                 >  2:362501/1‑138 (MQ=255)

                                                             ttAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGATAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTcc                                                                              >  6:134834/1‑139 (MQ=255)

                                                             ttAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTcc                                                                              >  7:93353/1‑139 (MQ=255)

                                                                 ctcactcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGt                                                                           >  7:212009/1‑138 (MQ=255)

                                                                 ctcactcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGt                                                                           >  6:90508/1‑138 (MQ=255)

                                                                 ctcactcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCAAAC‑TCAATTAGAACCAAATGTTCCTGt                                                                           >  3:7708/1‑138 (MQ=255)

                                                                   cactcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTaa                                                                         >  4:260415/1‑138 (MQ=255)

                                                                     ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACCCATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAAc                                                                        >  2:88393/1‑137 (MQ=255)

                                                                     ctcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGATAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACaa                                                                      >  3:288773/1‑139 (MQ=255)

                                                                      tcaTTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAAc                                                                        >  4:92654/1‑136 (MQ=255)

                                                                         ttAGGCACCCCAGGCGTTACGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACaagaag                                                                  <  8:75778/139‑1 (MQ=255)

                                                                         ttAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACaagaag                                                                  <  6:161873/139‑1 (MQ=255)

                                                                          tAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGttt                                                                                                                                            <  2:330293/65‑1 (MQ=255)

                                                                          tAGGCACCCCAGGCGTTAAGATGGCAAGCTGGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGc                                                                 >  6:210755/1‑139 (MQ=255)

                                                                            ggCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACAATTAAAATGAAGTTTGACATGAAAGGAAGTATTTCAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCa                                                               <  3:257973/139‑1 (MQ=255)

                                                                             gCACCCCCGGCGTTAAGATGGCAAGCTTGACAATTTTTTCCTACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCAt                                                              <  3:152420/139‑1 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAAt                                                                                                                   <  6:115823/84‑1 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATg                                                                                                                  <  7:304853/85‑1 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  1:212215/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  1:268322/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  2:212194/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  4:72021/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  8:325221/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  3:133620/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  7:144818/1‑138 (MQ=255)

                                                                                ccccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAAAGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATAAGAACAAAATGTTCCTGTAACAAGAAGACATTc                                                            >  8:296967/1‑138 (MQ=255)

                                                                                cccaAGGCGTTAAGATGGCAAGCTTGACTAGTATTTCCGACACATTTAAAATGAAGTTTGACATGATAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTc                                                            >  5:60961/1‑138 (MQ=255)

                                                                                 cccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCaa                                                          >  1:151488/1‑139 (MQ=255)

                                                                                  ccAGGCGTTAAGATGGCAATCTTGACAAGTATTTCCGACACATTTAAAATGAAGTGTGGCATGAAAGGAAGTATTTCATAATGAAGAATACTCCTCC‑TCATTTAGAACCAAATGTTCCTGTACCAAGAAGCCATTCAAt                                                         >  6:46338/1‑139 (MQ=37)

                                                                                  ccAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAgg                                                                                                                                 >  1:319303/1‑68 (MQ=255)

                                                                                  ccAGGCGTTAAGATGCCAAGCTTGACAAGTATTACCGACACATTTAAAATCAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAAt                                                         <  3:347136/139‑1 (MQ=255)

                                                                                      gCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGa                                                     >  4:148154/1‑139 (MQ=255)

                                                                                           aaGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATg                                                                                                                  >  5:371390/1‑74 (MQ=255)

                                                                                           aaGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCa                                                               <  5:222021/124‑1 (MQ=255)

                                                                                           aaGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGTGATTTg                                                 >  1:71971/1‑138 (MQ=255)

                                                                                           aaGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGt                                                >  7:233990/1‑139 (MQ=255)

                                                                                           aaGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑ACAATTAGAACCAAATGTTCCTGTAACaagaa                                                                   <  1:241461/120‑1 (MQ=255)

                                                                                                ggCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCAttt                                           >  5:250808/1‑139 (MQ=255)

                                                                                                ggCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCAttt                                           >  7:40504/1‑139 (MQ=255)

                                                                                                ggCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCAttt                                           <  2:248433/139‑1 (MQ=255)

                                                                                                ggCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATATGAAAATGAAGAATACTCAAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCAttt                                           >  5:346096/1‑139 (MQ=255)

                                                                                                  cAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCAtttt                                          >  2:27925/1‑138 (MQ=255)

                                                                                                        tGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCaa                                                          <  5:86798/116‑1 (MQ=255)

                                                                                                         gACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAtctc                                    <  7:181062/137‑1 (MQ=255)

                                                                                                           cAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCAtg                                 <  7:27646/138‑1 (MQ=255)

                                                                                                                        cacaTTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                   <  8:251998/139‑1 (MQ=255)

                                                                                                                        cacaTTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                   <  4:345164/139‑1 (MQ=255)

                                                                                                                        cacaTTTAAAATGAAGTTTGAAATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                   <  2:149236/139‑1 (MQ=255)

                                                                                                                        caaaTTTAAAATGAAGTTTGACATGAAAGTAAGTTTTTGAAAATTAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                   <  1:346224/136‑1 (MQ=255)

                                                                                                                          caTTAAAAATGAATTTTGAAATTAAATGAACTATATGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggc                 <  5:295996/139‑1 (MQ=14)

                                                                                                                           aTTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg                <  3:96956/139‑1 (MQ=255)

                                                                                                                           aTTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcg                <  5:166958/139‑1 (MQ=255)

                                                                                                                            tttAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGAt                                       >  8:355092/1‑115 (MQ=255)

                                                                                                                               aaaaTGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt             <  4:290332/138‑1 (MQ=255)

                                                                                                                                aaaTGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTTAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTa           <  4:234036/139‑1 (MQ=255)

                                                                                                                                aaaTGAAGTATGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGCACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTa           <  8:155122/139‑1 (MQ=255)

                                                                                                                                     acgTTTGACATGAAAGGACGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCGTATTGt       <  4:51276/136‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAATGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  7:120895/138‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg                            >  6:302585/1‑117 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  5:186451/138‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  8:274303/138‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  8:121495/138‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      <  2:59158/139‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      >  4:316574/1‑139 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      >  3:210634/1‑139 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      >  1:97620/1‑139 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      <  4:194061/139‑1 (MQ=255)

                                                                                                                                     aaGTTTGACATGAAAGGAAGAATTTAAAAAT‑TACAAAAAACCAACGACAATAAGAA‑CAAATTTTACATTAACAAGAAGCCAATCAATTGGTATTGTAAATTTGATCAAAAGTTGCGAGGGGCATGGCGGCCTAATGtta     >  6:241611/1‑137 (MQ=255)

                                                                                                                                     aaGTTTGACAGGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAATAAGCCATTCAATGGTATTTGTCATTTTGATCTCATGTGAGGCGGGGCTTGGAGGCTTATTGTa      >  3:111605/1‑139 (MQ=17)

                                                                                                                                     aaGTTTCATATTAAAGGACGTATTAGAAAATGAAGAATACTCCAAC‑TCAATTATAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  8:39796/138‑1 (MQ=14)

                                                                                                                                     aaGTCTTACATCAAAGTAAGTATTTCAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt       <  3:319432/138‑1 (MQ=14)

                                                                                                                                      aGTTTTACAAGAAAGTAAGTATTTTAAAATGAACAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa      <  2:176347/138‑1 (MQ=14)

                                                                                                                                       gTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTg                   <  7:69910/124‑1 (MQ=255)

                                                                                                                                          tGACATGAAAGGAAGTATTTCAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGc  <  2:120984/138‑1 (MQ=255)

GCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCGTTAAGATGGCAAGCTTGACAAGTATTTCCGACACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAAC‑TCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGC  >  pSIJ663_pHT315_araE_xy/9643‑9918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.