| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,152 | +GT | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,152 | 1 | . | G | 92.0% | 530.3 / 44.7 | 151 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (1/11); new base G (45/92); total (48/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.94e-01 | |||||||||||
| * | BS168_reference_genome | 1,317,152 | 2 | . | T | 90.7% | 489.8 / 45.9 | 151 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (3/11); new base T (45/91); total (48/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.84e-01 | |||||||||||
Only 100 of 169 total aligned reads displayed.
TAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑C‑TT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317003‑1317287 || tAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑g < 1:2235633/150‑1 (MQ=255) aaaTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑gg < 2:738341/150‑2 (MQ=255) agtGGATGCCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggt < 2:3377021/148‑3 (MQ=255) aTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtc > 1:2073154/1‑147 (MQ=255) tGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtct < 1:2776490/150‑5 (MQ=255) ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt > 1:83874/1‑145 (MQ=255) ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt > 1:4033407/1‑145 (MQ=255) ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt < 2:2943754/150‑6 (MQ=255) gATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑t < 2:2641547/150‑1 (MQ=255) aTGTCAGGTTTGTTGGTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑tt < 1:1105324/150‑2 (MQ=255) aTGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑tt < 1:3331822/150‑2 (MQ=255) tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 1:3506180/150‑3 (MQ=255) tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 1:2352799/150‑3 (MQ=255) tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 2:1932933/150‑3 (MQ=255) gTCAGGTTTGTTGCTCGGTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGGTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑TC‑tt‑t‑ttt < 2:2151896/150‑1 (MQ=255) aGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑TC‑tt‑t‑tttatt < 2:3125981/150‑4 (MQ=255) ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATttctt > 1:1129233/1‑150 (MQ=255) tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATttcttc < 1:4007455/150‑1 (MQ=255) ttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAg < 2:2710483/150‑1 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGCGT‑C‑TT‑TTGT‑ATTTCTTCAGc > 1:2354077/1‑150 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCAAGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGc < 2:175841/150‑1 (MQ=255) cTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCtt > 2:2830834/1‑150 (MQ=255) tCGTTGCGGTCGGGTCCAGCTTTGCCCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAATAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTc < 2:1732929/150‑1 (MQ=255) ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAt < 1:1017868/150‑1 (MQ=255) tGCGGTCGGGTTCAGCTTTCCCCAGGTGATGGTCCATGCAGGTGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAtt < 2:2856938/150‑1 (MQ=255) tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGCTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAtt < 2:2069406/150‑1 (MQ=255) tGCGGTCGGGTCCAGCTGTACTCAGGTGATGGTCCATCCAGGTGAAACAGCAACCACAGAAGGGAGAACATTTCATATTGCGGCACGCAATCAAACAGGATGCATAAAGAAAGACCCTGA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTACCttt < 2:913755/150‑1 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACGGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCt < 2:2188099/150‑1 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCt > 1:1844459/1‑150 (MQ=255) tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCtttt < 1:1216050/150‑1 (MQ=255) ttCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt > 1:1835220/1‑150 (MQ=255) tccAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 1:2316258/148‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTCTCGTCAGc > 2:3288677/1‑150 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:511359/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:2812381/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:1770398/150‑1 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa < 2:3561810/150‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 2:3959432/150‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 2:2367676/150‑1 (MQ=255) tGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa < 1:3727611/150‑1 (MQ=255) gATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGGAATCAAACATTATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 1:1951955/150‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt < 2:1232629/150‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:1568662/1‑150 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg < 2:243157/150‑1 (MQ=255) cATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac < 2:1649090/150‑1 (MQ=255) cATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac < 1:3815232/150‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 1:434544/1‑150 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTC‑TTCTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 2:2917588/1‑150 (MQ=255) gCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 1:3185079/150‑1 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGCg > 2:3693307/1‑150 (MQ=255) ggTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGccg > 1:1898401/1‑148 (MQ=255) tGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 2:2952332/150‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 2:1325238/150‑1 (MQ=255) aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:848395/1‑150 (MQ=255) aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:981731/1‑150 (MQ=255) gCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg < 2:3903110/150‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAACAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑TTTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGc < 2:4070428/150‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:1559150/150‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 1:3505028/150‑1 (MQ=255) acacAGAAGGGAAAACATTTCATTTTCCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg < 1:2472316/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCCCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 2:1747239/150‑1 (MQ=255) caGAAGGGAAAACATCTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:2416502/150‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:2329173/144‑1 (MQ=255) aaGGGAAACCATTCCGTGTTGCGGCACCCAATCAAACATGATGCATAAAGAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑GTTTCTCCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2156272/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 1:2830834/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:479231/150‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2589632/150‑1 (MQ=255) aCATTTCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc < 2:591430/150‑1 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt < 1:2664000/150‑1 (MQ=255) tttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCCTGGCCGATTTCCGCTGCctcctc > 1:1400937/1‑150 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GG‑GGCCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTcc < 2:3439907/150‑1 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 1:2337975/150‑1 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg > 2:1142579/1‑150 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTgg > 2:2324155/1‑149 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 1:2480412/150‑1 (MQ=255) gCGGCACGCATTCAACCATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATc < 2:3515341/150‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt > 1:9079/1‑150 (MQ=255) gCACGCAATCAAACATGATGCATAAAAGAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTGTATCGTCAGCTCAGAAGATCCCCTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGc < 1:3744688/150‑1 (MQ=255) gCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCCGTGAATCTGc > 2:3850935/1‑150 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTc < 1:2531159/150‑1 (MQ=255) gCAACCAACCATGATGCATAAGAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:2635511/150‑1 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 2:1613151/1‑150 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 1:2715208/1‑150 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 2:202234/1‑150 (MQ=255) cAAACAGGATGCAAAAAAAAACTGCCTTAGGGG‑G‑‑T‑TT‑TT‑TCATTTCTTCAGCTTCCATTTTTGTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCATCGATGAc < 1:1697572/150‑1 (MQ=255) aaaCATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 2:2526126/150‑1 (MQ=255) aaaCATGATGCAAAAAAAAAGACCCATA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 1:988152/150‑1 (MQ=255) atgatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg < 1:1587270/150‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGGTTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:1866354/1‑150 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 1:1046689/150‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:3577720/1‑150 (MQ=255) gaagCATAAAACAAGACCCTTA‑‑GG‑GGTC‑TT‑TT‑TAATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 2:1530493/147‑1 (MQ=255) tgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGGTGCCATACGCTcc > 2:3778928/1‑150 (MQ=255) cATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc > 2:2227193/1‑150 (MQ=255) aaaaaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGGAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATTCGCTCCGCCtgt > 1:63216/1‑150 (MQ=255) aaaaaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCCCCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGCGGATCTGCTTCGATGGCATACGCTCCGCCtgt > 2:658073/1‑150 (MQ=255) aaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:434544/150‑1 (MQ=255) aaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:1187307/150‑1 (MQ=255) aaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGACAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCg < 1:3365315/150‑1 (MQ=255) aGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGGCATACGCTCCGCCTGTGGCGt > 1:2258201/1‑150 (MQ=255) || TAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑C‑TT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317003‑1317287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |