| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,152:1 | +G | 100% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,152 | 1 | . | G | 92.0% | 776.3 / 67.4 | 224 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (8/10); new base G (117/87); total (127/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-01 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
Only 100 of 235 total aligned reads displayed.
AAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GG‑‑C‑T‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTC > BS168_reference_genome/1317004‑1317288 | aaTGGATGTCAGGTTTGTTGCGCGTTGCGGTCGGGTTCAGCTTAACTGAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAg‑gggt < 1:4179132/150‑3 (MQ=255) tGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAg‑gggtct < 2:2362377/150‑5 (MQ=255) tGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAg‑gggtct > 1:1551594/1‑146 (MQ=255) ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAg‑gggtctt > 1:5290605/1‑145 (MQ=255) gTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GG‑‑G‑T‑C‑tt‑tttt < 1:595587/150‑1 (MQ=255) gTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GG‑‑G‑T‑C‑tt‑tttt > 1:4133553/1‑150 (MQ=255) gTTTGTTGCACGTTGCGGTCGGGTCCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GG‑‑G‑T‑C‑tt‑ttttatttc < 2:5089705/150‑6 (MQ=255) ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATttctt > 1:5025789/1‑150 (MQ=255) gttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCa < 2:581691/150‑1 (MQ=255) ttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAg < 1:2423248/150‑1 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGc < 2:2559772/150‑1 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGc > 1:4007544/1‑150 (MQ=255) gTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCa > 2:367903/1‑150 (MQ=255) ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAt > 1:3399360/1‑150 (MQ=255) tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAtt > 2:1450122/1‑150 (MQ=255) tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAtt > 2:1989440/1‑150 (MQ=255) tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCtttt < 1:4214697/150‑1 (MQ=255) cGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTa > 2:3429284/1‑150 (MQ=255) ggTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATc < 1:1038664/150‑1 (MQ=255) cattACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTC‑T‑TAGT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 2:4333044/3‑150 (MQ=255) cTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt < 2:1349987/150‑1 (MQ=255) tttACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 1:47065/150‑1 (MQ=255) tttACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 2:4223971/150‑1 (MQ=255) tttACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGATTCCATTCTTTTATCGTCAGATc > 1:3520072/1‑150 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa < 1:3675336/150‑1 (MQ=255) cAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaaga > 2:3107939/1‑150 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc > 1:5614374/1‑150 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 1:2366305/150‑1 (MQ=255) tGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa < 1:2739309/150‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt > 1:3624189/1‑150 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt > 2:4451041/1‑150 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:887436/1‑150 (MQ=255) ttCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 2:1395143/150‑1 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcca < 2:1584633/150‑1 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGcca < 2:1300694/150‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 1:2894818/1‑150 (MQ=255) cAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGc < 2:4093747/150‑1 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTTTCGTCAGCTCAGAGGATCCACTTGCCACCcgcg > 1:3330800/1‑150 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 1:382613/1‑150 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGa > 1:211453/1‑150 (MQ=255) tGAAACAGCAAACACAGAAGGGAAAACATTTTATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 1:5545280/150‑1 (MQ=255) gAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATc > 1:3071424/1‑150 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 2:4699378/150‑1 (MQ=255) aaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg < 1:4113652/150‑1 (MQ=255) aCAGCAAACACAGTAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGc < 2:1486279/150‑1 (MQ=255) cAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATgg < 2:4889525/150‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGAGGT‑CTT‑T‑TT‑TATATCTTCAGCTTCCATTCTTTTTTCGTTAGTTTAGAAGATCCACTTACCATCACCATATCCGCATGGc > 1:4901430/1‑150 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:2712118/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGATCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 1:80867/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 2:2847590/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCACATGGCCGAt > 2:3354160/1‑150 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCTCATGGCCGAtt > 1:4828133/1‑150 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:484608/150‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAttt < 2:517660/150‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTc > 2:2661179/1‑150 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:5470227/150‑1 (MQ=255) gggAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGc < 1:5132378/150‑1 (MQ=255) ggAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt > 1:4644353/1‑150 (MQ=255) aaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCct > 2:1715450/1‑150 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 1:1228455/150‑1 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 1:190368/1‑150 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTCAG‑GGGTC‑T‑TATT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATCGCCCATTTCCCCTGCctct > 2:1156557/1‑150 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt < 2:4809230/150‑1 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt > 2:628428/1‑150 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTcc < 1:2779669/150‑1 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 1:1437747/150‑1 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGCATCCGCATGGCCGATTTCCACTGCCTCTTCCAg > 1:2290143/1‑150 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt < 2:5166091/150‑1 (MQ=255) ttGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGaa < 2:2218189/150‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt > 1:4377699/1‑150 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt < 2:3058768/150‑1 (MQ=255) ggCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTg > 1:388442/1‑150 (MQ=255) ggCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTg > 1:4091528/1‑150 (MQ=255) cACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCATAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCt > 1:783552/1‑150 (MQ=255) gCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg > 1:2042116/1‑150 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTC‑TGT‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATTCACTTGCCACCAGCGGATCCGGATGGCCGATTTCCGCCGCCTCTTCCAGTGAATCTGGTTCgt > 1:1083779/1‑149 (MQ=255) cAATCAAACATGATACATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTATTATCGTCAGGTCAGAAGATCCACTTGCCACCAGCGGATCCCCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 1:5186044/1‑150 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg < 2:3499900/150‑1 (MQ=255) tCAAACATGGTGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCTAATCTTTTATTGTCAGCTCACAAGATCCACTTGCCCCCGGCGCATCCTCATGCGCCATTTTCACTGGCTCTTCCAGTGATACTTCTTAGAttg > 1:1463581/1‑148 (MQ=255) aaaCATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 2:3942311/1‑150 (MQ=255) aaaCATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTCCCTCTTCCAGTGAATCTGCTTCGATGACa > 1:3256117/1‑150 (MQ=255) aaCATGATGCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACAt > 1:3127796/1‑150 (MQ=255) atgatgCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGTAATACg > 1:666048/1‑150 (MQ=255) tgatgCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc > 1:606860/1‑150 (MQ=255) tgCATAAAAAATGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTcc > 1:1708339/1‑150 (MQ=255) tgCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTcc > 2:5392091/1‑150 (MQ=255) gCATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCg > 1:995646/1‑150 (MQ=255) cATAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc > 1:5488922/1‑150 (MQ=255) tAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCt > 1:5406596/1‑150 (MQ=255) tAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCt > 2:2398038/1‑150 (MQ=255) tAAAAAAAGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCt > 1:5383442/1‑150 (MQ=255) aaaaaaaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtg > 2:3720559/1‑150 (MQ=255) aaaaaaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtgt > 1:3475463/1‑150 (MQ=255) aaaaaaGACCCTTAG‑GGGACTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtgt > 1:4257714/1‑150 (MQ=255) aaaaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTgg > 1:2543866/1‑150 (MQ=255) aaaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTGCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc > 1:4684725/1‑150 (MQ=255) aaaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:4088947/150‑1 (MQ=255) aaGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCg > 2:5647935/1‑150 (MQ=255) aGACCCTTAG‑GGGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGt > 1:2206089/1‑150 (MQ=255) gACCCTTAG‑GGGTC‑T‑T‑TTCTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCggc > 2:3377585/1‑148 (MQ=255) | AAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAG‑GG‑‑C‑T‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTC > BS168_reference_genome/1317004‑1317288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |