| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 0 (0.000) | 34 (0.000) | 32/272 | NT | 100% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 0 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||
TTGAGCCTTCATAACGAACGCGATCGAGCTGGTCAAAATAGGCTTGCATGTGTACATTCCTCTCTTACCTATAATGGTACCGCTATCACTTTATATTTTACATAATCGCGCGCTTTTTTTCACGCCCATTTCTAAAAATGTAAAATTACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGC > pSIJ663_pHT315_araE_xy/9384‑9677 | tcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgatacc < 2:4429678‑M2/2‑1 (MQ=255) aggggggcggagcctatggaaacacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGc < 2:1069008‑M2/4‑1 (MQ=255) ggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCt < 2:5013842‑M2/5‑1 (MQ=255) agcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGc > 2:5844541‑M2/137‑150 (MQ=255) agcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGc > 1:1898989‑M2/137‑150 (MQ=255) ggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGa > 1:625921‑M2/130‑150 (MQ=255) aaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGTCGCTGGCGAACGTCCg > 1:223920‑M2/127‑150 (MQ=255) ggcctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGt > 1:5774755‑M2/111‑150 (MQ=255) ctttttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataactgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGGGCGCAGCGAGTCAGTGAg > 1:4965532‑M2/108‑150 (MQ=255) tttacggttcctggtcttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattagcgcctttgagtgagctgataCCGCCCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGa < 2:4286097‑M2/46‑1 (MQ=255) ttacggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAg > 2:1464941‑M2/104‑150 (MQ=255) cggttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGaa < 2:2682985‑M2/50‑1 (MQ=255) ttcctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCg > 2:4945635‑M2/98‑150 (MQ=255) ctggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGaa < 2:3015202‑M2/56‑1 (MQ=255) tggccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAag < 2:4074887‑M2/57‑1 (MQ=255) ccttttgctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAgc < 2:5026987‑M2/60‑1 (MQ=255) ctggccttttgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAAt > 1:3312222‑M2/84‑150 (MQ=255) tgctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAAcc > 1:924632‑M2/75‑150 (MQ=255) gctcacatgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCg > 1:5825405‑M2/74‑150 (MQ=255) catgttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCctct > 1:4067102‑M2/69‑150 (MQ=255) gttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGAGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTccc > 1:4780947‑M2/66‑150 (MQ=255) ttctttcctgcgttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTcccc < 2:5493943‑M2/86‑1 (MQ=255) ttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCg < 2:3547526‑M2/98‑1 (MQ=255) ttatcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCg > 1:3955962‑M2/53‑150 (MQ=255) atcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGAt < 2:339852‑M2/100‑1 (MQ=255) atcccctgattctgtggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGAt < 1:2257802‑M2/100‑1 (MQ=255) ggataaccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTg > 2:4593754‑M2/36‑150 (MQ=255) accgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACg < 1:4945635‑M2/120‑1 (MQ=255) ccgtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGa > 2:4854414‑M2/30‑150 (MQ=255) gtattaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACa > 2:96123‑M2/28‑150 (MQ=255) attaccgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAgg > 2:4853683‑M2/26‑150 (MQ=255) accgcctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGttt > 1:2059187‑M2/23‑150 (MQ=255) cctttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCg > 2:880209‑M2/19‑150 (MQ=255) tttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGAc > 2:1290140‑M2/17‑150 (MQ=255) ttgagtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACt < 2:1908006‑M2/135‑1 (MQ=255) agtgagctgataCCGCTCGCCGCAGCCGAACGTCCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGActgca > 1:4043927‑M2/13‑148 (MQ=255) agtgagctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGa < 2:2598009‑M2/138‑1 (MQ=255) ctgataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCgg > 2:688605‑M2/7‑150 (MQ=255) gataCCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCAATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGc < 2:5774755‑M2/146‑1 (MQ=255) | TTGAGCCTTCATAACGAACGCGATCGAGCTGGTCAAAATAGGCTTGCATGTGTACATTCCTCTCTTACCTATAATGGTACCGCTATCACTTTATATTTTACATAATCGCGCGCTTTTTTTCACGCCCATTTCTAAAAATGTAAAATTACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGC > pSIJ663_pHT315_araE_xy/9384‑9677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |