| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,153 | C→G | 7.0% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 0 | C | G | 7.0% | 709.7 / 28.8 | 224 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base C (120/87); new base G (6/10); total (127/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-01 | |||||||||||
Only 100 of 224 total aligned reads displayed.
GATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑C‑T‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTC > BS168_reference_genome/1317009‑1317288 | gATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑t‑c‑tt‑t < 1:3173232/150‑1 (MQ=255) tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑t‑c‑tt‑ttt < 2:5169678/150‑3 (MQ=255) gTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑T‑C‑tt‑tttt > 1:4133553/1‑150 (MQ=255) tCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑T‑C‑tt‑tttta < 1:5618035/150‑2 (MQ=255) tCAGGTTTGTTGCTCGTTGCGCTGGGGTTCACCTTTACTCAGGTGTTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTACATATTGCGGCACGCAATCAAACATTATGCATAAAAAAAGACACTTAGG‑‑‑G‑‑G‑T‑C‑tt‑tttta < 1:1581692/150‑2 (MQ=255) cAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑T‑C‑tt‑ttttat > 1:2142794/1‑148 (MQ=255) cAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑T‑C‑tt‑ttttat < 2:5568441/150‑3 (MQ=255) ggTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑G‑T‑C‑tt‑ttttattt > 1:499982/1‑146 (MQ=255) ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATttctt < 1:3981270/150‑1 (MQ=255) ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATACAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATttctt > 2:2360274/1‑150 (MQ=255) tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATttcttc < 1:5085366/150‑1 (MQ=255) tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATttcttc > 2:1400144/1‑150 (MQ=255) gttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCa < 2:581691/150‑1 (MQ=255) tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGc < 2:2559772/150‑1 (MQ=255) cGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTcc < 2:4731190/150‑1 (MQ=255) gTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCa < 2:5807004/150‑1 (MQ=255) gTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCa > 2:367903/1‑150 (MQ=255) ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAt < 1:2777590/150‑1 (MQ=255) ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAt < 1:3461323/150‑1 (MQ=255) tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAtt > 2:1697630/1‑150 (MQ=255) tGCGGCCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAACCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCAtt < 1:4695101/150‑1 (MQ=255) gCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTc < 2:3472080/150‑1 (MQ=255) ggTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCtt > 1:4659155/1‑150 (MQ=255) cGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTa > 2:3429284/1‑150 (MQ=255) ggTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATc < 1:1038664/150‑1 (MQ=255) tCATCTTTACTCATGTTATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCATAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTc < 1:2043986/150‑1 (MQ=255) tCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTc < 1:3072781/150‑1 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 1:3634154/150‑1 (MQ=255) cTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 2:4333046/1‑150 (MQ=255) cTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt < 2:1349987/150‑1 (MQ=255) tttACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGATTCCATTCTTTTATCGTCAGATc > 1:3520072/1‑150 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 1:5410321/1‑150 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 1:4283146/1‑150 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa > 1:5166091/1‑150 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa < 1:3675336/150‑1 (MQ=255) cAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaaga > 2:3107939/1‑150 (MQ=255) cAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGACTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaaga < 1:2324453/150‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc > 2:4823/1‑150 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 1:2366305/150‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc > 1:877380/1‑150 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:3367660/1‑150 (MQ=255) ttCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 2:1395143/150‑1 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATGCACTTGcca < 1:1437979/150‑1 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcca < 2:1584633/150‑1 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGcca < 2:1300694/150‑1 (MQ=255) tGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacca > 1:66528/1‑150 (MQ=255) gCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 2:4507819/150‑1 (MQ=255) cAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGc < 2:4093747/150‑1 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTGATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAAGCCCTTAGG‑‑‑GGTC‑T‑TGTT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 1:2232182/1‑150 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 1:382613/1‑150 (MQ=255) ggTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCgg < 2:4973213/150‑1 (MQ=255) tGAAACAGCAAACACAGAAGGGAAAACATTTTATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 1:5545280/150‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 1:462349/150‑1 (MQ=255) aaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg < 1:4113652/150‑1 (MQ=255) aCAGCAAACACAGTAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGc < 2:1486279/150‑1 (MQ=255) cAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 2:3976664/150‑1 (MQ=255) ccAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg < 2:5218881/149‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:2712118/150‑1 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:4278970/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt > 2:5148712/1‑150 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 2:2847590/150‑1 (MQ=255) acaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCACATGGCCGAt > 2:3354160/1‑150 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCTCATGGCCGAtt > 1:4828133/1‑150 (MQ=255) caGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:484608/150‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAttt > 2:3051001/1‑150 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATCCTTTTATCGTCAGCTCAGAAGATCCACTTGACACCAGCGGATCCGCATGGCCGAtat > 1:280884/1‑148 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTG‑‑T‑T‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGGTTTc > 1:2991470/1‑150 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTc > 2:2661179/1‑150 (MQ=255) aGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 1:2659945/1‑150 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 1:190368/1‑150 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 1:1228455/150‑1 (MQ=255) cATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTCAGG‑‑‑GGTC‑T‑TATT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATCGCCCATTTCCCCTGCctct > 2:1156557/1‑150 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt > 2:628428/1‑150 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTg < 1:704081/150‑1 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa > 2:3784603/1‑150 (MQ=255) ttGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGaa < 2:2218189/150‑1 (MQ=255) ggCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTg > 1:388442/1‑150 (MQ=255) ggCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTg > 1:4091528/1‑150 (MQ=255) cACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCATAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCt > 1:783552/1‑150 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTTCAGTGAATCTGCTTc > 1:4191084/1‑150 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 1:4714469/1‑150 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTC‑TGT‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATTCACTTGCCACCAGCGGATCCGGATGGCCGATTTCCGCCGCCTCTTCCAGTGAATCTGGTTCgt > 1:1083779/1‑149 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 1:4240141/1‑150 (MQ=255) aaaCATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTCCCTCTTCCAGTGAATCTGCTTCGATGACa > 1:3256117/1‑150 (MQ=255) cATGATGCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATAc > 1:1379196/1‑150 (MQ=255) tgatgCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 2:173967/150‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:605328/1‑150 (MQ=255) atgCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 1:5404935/150‑1 (MQ=255) tgCATAAAAAATGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTcc > 1:1708339/1‑150 (MQ=255) tgCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTcc > 2:5392091/1‑150 (MQ=255) gCATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCg > 1:995646/1‑150 (MQ=255) cATAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc > 1:5488922/1‑150 (MQ=255) aTAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGcc > 1:892591/1‑150 (MQ=255) tAAAAAAAGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCt > 2:2398038/1‑150 (MQ=255) aaaaaaaGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtg > 2:3720559/1‑150 (MQ=255) aaaaaaGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCtgt > 1:3475463/1‑150 (MQ=255) aaaGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc > 1:5277965/1‑150 (MQ=255) aaaGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc > 1:2478651/1‑150 (MQ=255) aaaGACCCTTAGG‑‑‑GGTCTT‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc > 2:4191593/1‑150 (MQ=255) gACCCTTAGG‑‑‑GGTC‑T‑T‑TTATATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTc > 2:3377583/1‑150 (MQ=255) | GATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGG‑‑‑G‑‑C‑T‑T‑TT‑TATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTC > BS168_reference_genome/1317009‑1317288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |