| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 3,723,067 | 1 bp→AT | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,723,066 | 1 | . | A | 90.0% | 793.5 / 83.0 | 241 | intergenic (‑180/‑121) | U712_19190/U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base . (13/11); new base A (120/97); total (133/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.52e-01 | |||||||||||
| * | CP006881 | 3,723,067 | 0 | G | T | 90.5% | 750.2 / 48.6 | 241 | intergenic (‑181/‑120) | U712_19190/U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (121/97); minor base A (12/11); total (133/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
Only 100 of 252 total aligned reads displayed.
CTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑G‑TTTTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAAC > CP006881/3722921‑3723217 ||| cTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttt < 1:2393934/150‑1 (MQ=255) tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCCTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑tttt < 2:2933935/150‑1 (MQ=255) aaaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt > 2:3422241/1‑150 (MQ=255) aaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt‑t < 2:1898887/150‑1 (MQ=255) aaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt‑tt > 2:1015785/1‑149 (MQ=255) aTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt‑tta < 1:2889874/150‑3 (MQ=255) ttCGCCAACGAATACAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt‑ttag < 1:2782424/150‑4 (MQ=255) tCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑ttttt‑ttagt > 1:2854347/1‑146 (MQ=255) gCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTa > 2:1364524/1‑150 (MQ=255) gCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTa > 2:1699658/1‑150 (MQ=255) cAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTaaa < 2:2682589/150‑1 (MQ=255) aCGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATa > 2:3401359/1‑150 (MQ=255) cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAg > 2:3918516/1‑150 (MQ=255) tAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTg < 2:2854347/150‑1 (MQ=255) tAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTg > 2:1957874/1‑150 (MQ=255) aaaGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATTCGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGa > 1:3806820/1‑150 (MQ=255) aaaGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGa < 1:3014702/150‑1 (MQ=255) aaaGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTGTGa > 1:3275714/1‑150 (MQ=255) gACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATata > 2:452581/1‑148 (MQ=255) acacAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATataa > 2:3306644/1‑150 (MQ=255) cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAAc > 2:3524581/1‑150 (MQ=255) cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAAc > 1:3645925/1‑150 (MQ=255) acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAAca > 1:84892/1‑149 (MQ=255) caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAAcat > 2:1828484/1‑148 (MQ=255) gCGATCCTTTTTCATTTACGCATATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAAcatgt < 1:2168289/150‑5 (MQ=255) gtaccTTTTTCATTTGCGCAAATTTTAGGACTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAg < 1:2611559/147‑1 (MQ=255) cTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaa < 1:1364524/150‑1 (MQ=255) ttttCATTTCCGCAAATTTTAGGCCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaaaa < 2:1744801/150‑1 (MQ=255) ttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaaaa < 1:2121546/150‑1 (MQ=255) ttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaaaa > 2:3466157/1‑150 (MQ=255) ttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaaaa > 2:3859984/1‑150 (MQ=255) ttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACaaaa > 1:1040787/1‑150 (MQ=255) tCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTACGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGTCAAAAAtt > 1:1161122/1‑150 (MQ=255) tttACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGt < 2:1161682/150‑1 (MQ=255) tttACGCAAATTGTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGt < 1:409893/150‑1 (MQ=255) ttACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑TTTTTATAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTa > 2:465089/1‑150 (MQ=255) tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaa > 1:2625919/1‑150 (MQ=255) cGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaa < 1:3713591/150‑1 (MQ=255) aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGGTATAACATGTAGACAAAAATTCGTAAAAAATag > 2:1579256/1‑149 (MQ=255) ttttAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGACAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat < 2:2159430/150‑3 (MQ=255) aGGTCTTGCCTGCCTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGACAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg < 1:1869243/150‑1 (MQ=255) cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat < 1:2329405/150‑2 (MQ=255) cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat < 1:1581625/150‑2 (MQ=255) ccTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACtt < 2:1128319/150‑1 (MQ=255) cTGCTTTCCCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTc < 1:2735772/150‑1 (MQ=255) gCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcac > 1:611711/1‑150 (MQ=255) gCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTACGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAGCATTCGTAACAATTAATTGTGAAATACTTcac > 2:5546/1‑150 (MQ=255) ttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAat < 1:1127404/150‑1 (MQ=255) ttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAat > 2:3771997/1‑150 (MQ=255) aCCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat > 2:773073/1‑150 (MQ=255) aCCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat > 1:2136440/1‑150 (MQ=255) cAGTCCCAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCg < 2:700455/150‑1 (MQ=255) ctCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg > 2:3205330/2‑150 (MQ=255) cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt < 2:60021/150‑1 (MQ=255) cacaATCCCGCTTATTCAGACTTAGTATACGCTTTCATCATAAATCCTGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt < 1:3121199/150‑1 (MQ=255) acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCta < 2:1927124/150‑1 (MQ=255) acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCta > 1:3538811/1‑150 (MQ=255) caATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtat < 2:1600412/150‑1 (MQ=255) aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAAATGTGAAATACTTCACAATATCGTGCTATAc > 2:2452859/1‑150 (MQ=255) ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTATGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTaa > 1:2293615/1‑149 (MQ=255) cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt < 2:388504/150‑1 (MQ=255) tATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCa < 2:2797004/150‑1 (MQ=255) aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGGAATACTTCACAATATCGTGCTATACTATGCTCaa > 1:1963901/1‑150 (MQ=255) gATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtg > 2:2281962/1‑149 (MQ=255) gATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtg > 2:1107224/1‑149 (MQ=255) aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtga > 2:808246/1‑148 (MQ=255) aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaag < 1:3422241/149‑1 (MQ=255) agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga < 2:3734043/150‑1 (MQ=255) agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga < 1:172607/150‑1 (MQ=255) gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATTATGaaagaa < 2:905332/150‑1 (MQ=255) gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaa < 2:2473820/150‑1 (MQ=255) aTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag < 2:2018985/150‑1 (MQ=255) cTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATACTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGa < 1:2413106/150‑1 (MQ=255) tttCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGGAAGAAAGCAGGaa > 2:3276800/1‑150 (MQ=255) tcatcaTAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaa > 2:1047003/1‑150 (MQ=255) tcatcaTAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaa > 2:3061995/1‑150 (MQ=255) atcatAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaaga > 2:3647554/1‑148 (MQ=255) catAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGGAAAGACa > 2:3973234/1‑150 (MQ=255) atAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACaa > 2:1685767/1‑150 (MQ=255) tacatcaTGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACCATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt < 2:1321380/144‑1 (MQ=255) tAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt > 1:1005478/1‑150 (MQ=255) tAAATCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt > 1:1223817/1‑150 (MQ=255) aaaTCATGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg > 1:501098/1‑150 (MQ=255) atcaTGATTGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGa < 2:144038/147‑1 (MQ=255) aTGATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAAc > 1:2076253/1‑150 (MQ=255) gATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGACAGAAAGCAGGATAAGACAATGGAAACTc > 1:3599217/1‑150 (MQ=255) gATAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGGAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTc > 1:70652/1‑150 (MQ=255) tAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCaa > 1:1269246/1‑150 (MQ=255) tAGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCaa > 1:1445169/1‑150 (MQ=255) aGCGTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAg < 1:3252379/150‑1 (MQ=255) gTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAt < 1:61748/150‑1 (MQ=255) gTTTTCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAt < 1:334384/150‑1 (MQ=255) ttttCGTCAACTAT‑TTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGGCAATGGAAACTCAAGCAtt > 2:523989/1‑150 (MQ=255) gTCAACT‑ATTTTTT‑TAGTTAAATAGTTTGATATACCTTGTAGACAAAATTTCGTAAAAATTAATTGTGAAATACTTTACAATATCGTGCTATACTATGCACAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa < 1:192089/150‑1 (MQ=255) gTCAACT‑ATTTTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAGTTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGCAAAAGACAATGGAAACTCAAGCATTACaaa > 2:3679015/1‑150 (MQ=255) ctatttttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGtt < 2:262973/146‑1 (MQ=255) atttttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGa < 2:2136437/148‑1 (MQ=255) tttttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGaa < 1:1547864/149‑1 (MQ=255) tttttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGaa > 2:2306335/2‑150 (MQ=255) ttttt‑tAGTTAAATAGTTTGATTTGACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAAc < 1:717874/150‑1 (MQ=255) ||| CTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑G‑TTTTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAAC > CP006881/3722921‑3723217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |