| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,653,491 | C→T | 6.0% | T112I (ACA→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,653,491 | 0 | C | T | 6.0% | 861.8 / 20.7 | 233 | T112I (ACA→ATA) | U712_08495 | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Reads supporting (aligned to +/- strand): ref base C (52/167); new base T (2/12); total (54/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 | |||||||||||
Only 100 of 237 total aligned reads displayed.
AAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGA > CP006881/1653343‑1653635 | aaaaaaTGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAAcaacaa > 2:5399837/1‑150 (MQ=255) aaaaaTGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAAt > 2:1120024/1‑150 (MQ=255) aaTGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGTTATTAATAGTGAATATACTGCTTTCCCTGTTGTGAACAGAGACGTGTTTCAAGCTGGTTTAACAACAATtgt > 1:4889812/1‑150 (MQ=255) aaTGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATtgt < 1:4139115/150‑1 (MQ=255) tGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGc < 1:547056/150‑1 (MQ=255) tGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGc < 2:5747652/150‑1 (MQ=255) gCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGcc > 2:2183294/1‑150 (MQ=255) gCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGcc < 2:3686932/150‑1 (MQ=255) cTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCg < 2:141681/150‑1 (MQ=255) cTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCg < 1:393538/150‑1 (MQ=255) cTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCg < 1:1835633/150‑1 (MQ=255) tGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGat > 1:3928626/1‑150 (MQ=255) tGAGGATCGCCAATTCACTGAAGAATATACGAAAAATCTGTTTAGTGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATTCTGCTTTCCCTGTTGAAAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGat < 1:2499494/150‑1 (MQ=255) gAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGatc > 1:5639576/1‑150 (MQ=255) gAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGatc > 1:2742929/1‑150 (MQ=255) aGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGatca < 2:802703/150‑1 (MQ=255) aGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGatca < 1:5546882/150‑1 (MQ=255) ggATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGatcat > 2:3304625/1‑150 (MQ=255) cGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGa > 1:2108489/1‑150 (MQ=255) aaTTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCTCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGAAGGCg > 1:4891199/1‑150 (MQ=255) aaTTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCg < 1:3168793/150‑1 (MQ=255) ttCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCggg < 1:3456371/150‑1 (MQ=255) tCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCgggg < 1:3720634/150‑1 (MQ=255) tCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACACCTTCTAACTTGGATATTAATAGTGAACATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCgggg < 1:5268345/150‑1 (MQ=255) cTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGGGGGGaaa > 1:4938829/1‑150 (MQ=255) cTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGaaa > 2:4082166/1‑150 (MQ=255) tGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAg < 2:2405864/150‑1 (MQ=255) gaagaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGa < 1:1335148/150‑1 (MQ=255) gaagaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGa < 1:5698772/150‑1 (MQ=255) aagatTATTGGAAAAATCTGTCTAATGTCCCTGAGACATCTTCTAACTTGTATATTATTAGTGAATATACTGCTTTCCCTGTTGAGTACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGACCATCGGAGGCGGGGAAAGAt < 2:374522/150‑1 (MQ=255) gaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTa > 2:752424/1‑150 (MQ=255) aaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAg < 2:2982090/150‑1 (MQ=255) tataCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGa < 2:2470114/150‑1 (MQ=255) gAAAAATCTGTTTAATGTACCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACt < 1:1999398/150‑1 (MQ=255) aaaaaTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACtt < 2:3099394/150‑1 (MQ=255) aaaTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTAt < 1:1559820/150‑1 (MQ=255) tCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCt < 2:1178250/150‑1 (MQ=255) cTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCtt < 2:2220853/150‑1 (MQ=255) tAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTcgcg < 1:556738/150‑1 (MQ=255) atttCCCTGAAACATGTTGTAACTTGGATATTAATAGTGAATATCCTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGtt < 2:821670/147‑1 (MQ=255) gTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTa < 2:5017041/150‑1 (MQ=255) tCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTAc < 2:506302/150‑1 (MQ=255) gAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt < 1:4645027/150‑1 (MQ=255) aCATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaa < 1:400411/150‑1 (MQ=255) tcttctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaattc > 2:5389132/1‑150 (MQ=255) cttctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaattca < 1:2927827/150‑1 (MQ=255) cttctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCACCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaattca < 1:3304625/150‑1 (MQ=255) tctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaattcaat < 2:4867682/150‑1 (MQ=255) tatAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTCAGAACAGAGATCTGTTTCAAGCTGGTTTAACAACAATTCTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaattcaat < 1:4217734/148‑1 (MQ=255) ctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATg < 2:3928626/150‑1 (MQ=255) ctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGAACATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATg < 1:1719766/150‑1 (MQ=255) tAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGa > 2:691017/1‑150 (MQ=255) aaCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGAc > 2:3998733/1‑150 (MQ=255) ttGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGAt < 2:893604/150‑1 (MQ=255) ggATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGa < 1:2956536/150‑1 (MQ=255) atatTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACt < 1:4580691/150‑1 (MQ=255) atatTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACt < 2:4292998/150‑1 (MQ=255) atTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTa < 1:778960/150‑1 (MQ=255) aaTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAAtt > 2:2443983/1‑150 (MQ=255) aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc > 2:3238277/1‑150 (MQ=255) tAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCt < 1:648053/150‑1 (MQ=255) tAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCt < 1:4792619/150‑1 (MQ=255) aGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTa < 2:3624499/150‑1 (MQ=255) tGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGc > 2:5688917/1‑150 (MQ=255) gAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCt < 1:1229865/150‑1 (MQ=255) gAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCt > 2:937414/1‑150 (MQ=255) aCTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATAc < 2:2618072/150‑1 (MQ=255) cTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACg < 2:3597790/150‑1 (MQ=255) gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgc < 1:5008485/150‑1 (MQ=255) gCTTTCCCAGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGACCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgc < 1:1015906/150‑1 (MQ=255) tttCCCTGTTGAGAACAGAGACCTGTTTCTAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGTAAGATTAGGAACGCTTATTCTTTCGCGTTTACAAGTTCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgcgc > 2:4183091/1‑150 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa > 2:1594685/1‑150 (MQ=255) ccTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACa < 1:4834679/150‑1 (MQ=255) cTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAg < 1:362699/150‑1 (MQ=255) tGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGt < 1:1866027/150‑1 (MQ=255) gTTGAGAACAGAGACTTGTTTCAAGCTGGTTTAACAACAGTTGTGCCGATCAGCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTTCAAGATCAATTCAATGACGATGACATAATTCTAGCTGAATACGGCGCAACAGtt < 2:5225474/150‑1 (MQ=255) gTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt < 1:5399837/150‑1 (MQ=255) gTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt < 2:4492390/150‑1 (MQ=255) ttGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTg < 1:4515286/150‑1 (MQ=255) tGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGt < 1:907064/150‑1 (MQ=255) gagaACAGAGACCTCTTTCAAGCTGGTTTAACATCAATTGTGCCGATCATCGGAGGCGCGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTc < 1:2434172/150‑1 (MQ=255) gaACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCAGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCgg > 2:917279/1‑150 (MQ=255) gaACAGAGACCTGTTTCAACCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCgg < 1:2940871/150‑1 (MQ=255) aCAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGaa < 1:3590637/150‑1 (MQ=255) cAGAGATCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAAt < 1:1131481/150‑1 (MQ=255) cAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAAt > 2:5484514/1‑150 (MQ=255) agagACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATg < 2:1940834/150‑1 (MQ=255) tGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc > 2:4499965/1‑150 (MQ=255) ttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGGAAGATTAGGAACACATATTCTTTCGGGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTaa > 2:2827356/1‑150 (MQ=255) ttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTaa < 1:2310010/150‑1 (MQ=255) aaGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAagag > 2:3822831/1‑150 (MQ=255) aGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAgaga < 2:4647586/150‑1 (MQ=255) cTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGaaa > 2:4943722/1‑150 (MQ=255) tGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGaaaa < 2:2108489/150‑1 (MQ=255) tGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGaaaa < 2:1488816/150‑1 (MQ=255) ggTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGaaaaa < 2:1819448/150‑1 (MQ=255) tttAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGc > 2:2583408/1‑150 (MQ=255) tAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCag < 2:4889812/150‑1 (MQ=255) aacaacAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTGTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCaga < 2:5811969/150‑1 (MQ=255) aacaacAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCaga > 2:341267/1‑150 (MQ=255) | AAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGA > CP006881/1653343‑1653635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |