| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 2,054,382 | A→C | 100% | intergenic (+60/‑41) | U712_10180 → / → U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,054,382 | 0 | A | C | 98.8% | 1326.4 / 3.9 | 341 | intergenic (+60/‑41) | U712_10180/U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| Reads supporting (aligned to +/- strand): ref base A (3/2); new base C (176/159); total (180/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 341 total aligned reads displayed.
CAGTCAGGACTCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTGCTTTGAAGGAC > CP006881/2054236‑2054528 | gTCAGGACTCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGAc > 2:2542583/1‑150 (MQ=255) tCAGGACTAGGACGAGAAATGGGATCATATGACTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 1:1267781/150‑1 (MQ=255) ggtcacGGACGAGATATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg < 2:4085044/145‑1 (MQ=255) cTCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGTAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAat > 2:4534376/1‑150 (MQ=255) cTCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAat < 2:1694350/150‑1 (MQ=255) tCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAata > 2:3915816/1‑150 (MQ=255) ggACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatata < 1:3189641/150‑1 (MQ=255) gACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatat > 2:2355112/1‑150 (MQ=255) aCGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatata > 2:3854519/1‑150 (MQ=255) cGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatatat > 2:1217846/1‑150 (MQ=255) gagaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATg < 1:1772458/150‑1 (MQ=255) aaTGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTc > 1:3309397/1‑150 (MQ=255) aaTGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTATTCTTTCTGTAATGGGAGTACAAGACGCTGAATATATATGCTTc > 1:1013257/1‑150 (MQ=255) aTGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCt < 2:3798086/150‑1 (MQ=255) gggATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGa > 1:3757124/1‑150 (MQ=255) ggATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAATACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGaa > 1:3698992/1‑150 (MQ=255) tatGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGtt < 1:2275183/150‑1 (MQ=255) tatGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGtt > 1:2096875/1‑150 (MQ=255) gCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAg < 2:3455959/150‑1 (MQ=255) ccTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGGTTCTGAAGGAGTTGAGc < 2:2909108/150‑1 (MQ=255) cTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCg > 2:5455825/1‑150 (MQ=255) tGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTg < 2:5583525/150‑1 (MQ=255) gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGAt > 2:1137947/1‑150 (MQ=255) aTTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGc < 1:1181278/150‑1 (MQ=255) tACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGcac > 2:4269475/1‑150 (MQ=255) acacAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGcaca < 2:5189643/150‑1 (MQ=255) acacAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGGTGGGCGTGATGGGcaca > 1:4810585/1‑150 (MQ=255) cacaGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGACTTGAGCGTGATGGGCtcac > 1:576591/1‑150 (MQ=255) acaGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACt > 2:1652830/1‑150 (MQ=255) gAAGTCAAAAGTGTATAGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCa < 1:5578488/150‑1 (MQ=255) tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGgag < 1:4427384/150‑1 (MQ=255) aaaaGTGTATGGGTAAACCTTGAAGACTACCATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGaa < 1:290519/150‑1 (MQ=255) aaaaGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGaa < 1:5248404/150‑1 (MQ=255) aaaGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGaaa > 2:5368103/1‑150 (MQ=255) aaaGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGaaa > 1:711433/1‑150 (MQ=255) aGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCATTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt < 1:4476924/150‑1 (MQ=255) aGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt > 1:4336663/1‑150 (MQ=255) aGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt < 2:3487500/150‑1 (MQ=255) aGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt < 2:14554/150‑1 (MQ=255) gtgtATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTg < 1:2555339/150‑1 (MQ=255) gtgtATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTg > 1:2706646/1‑150 (MQ=255) tgtATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGa < 1:2797775/150‑1 (MQ=255) gtATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAg > 2:3632757/1‑150 (MQ=255) tATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAgg > 2:4835695/1‑150 (MQ=255) tATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAgg < 1:3932761/150‑1 (MQ=255) ggTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGtt > 2:5015523/1‑150 (MQ=255) aaaCCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTc > 2:5301846/1‑150 (MQ=255) aaCCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCa < 1:1678939/150‑1 (MQ=255) ccTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCaaa < 1:4874764/150‑1 (MQ=255) ccTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTATTCaaa > 1:3097202/1‑150 (MQ=255) ttGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAg > 2:2599062/1‑150 (MQ=255) ttGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAg > 1:813791/1‑150 (MQ=255) gAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaa > 2:4740674/1‑150 (MQ=255) gAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaa < 1:3577683/150‑1 (MQ=255) aaGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaaa > 1:1892998/1‑150 (MQ=255) aaGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaaa < 2:4249613/150‑1 (MQ=255) tAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCAt > 2:2996731/1‑150 (MQ=255) tAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCAt < 2:4862079/150‑1 (MQ=255) aaCATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCAtt > 2:2122385/1‑150 (MQ=255) cATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc < 2:747371/150‑1 (MQ=255) cATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc > 2:1904707/1‑150 (MQ=255) cATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc > 1:509446/1‑150 (MQ=255) tgtatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCg > 2:171105/1‑150 (MQ=255) gtatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGa < 2:2654988/150‑1 (MQ=255) tatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAg < 2:690095/150‑1 (MQ=255) tatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAg < 1:1451640/150‑1 (MQ=255) tatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGAAGTTGAGCGTGATGGGCACACTTCAGAAGAAAGTGAGGTGTTTTCAAAAGAAAACCATTACCGAg > 1:3461826/1‑150 (MQ=255) atgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGt > 2:5703485/1‑150 (MQ=255) tgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGtt < 1:4115778/150‑1 (MQ=255) tgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGtt < 2:2133771/150‑1 (MQ=255) ttAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAag < 1:1378302/150‑1 (MQ=255) ttAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAag < 1:4027098/150‑1 (MQ=255) ttAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAag > 2:4049759/1‑150 (MQ=255) aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAagag > 2:3724640/1‑150 (MQ=255) aCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGTCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGGGCGTGATGGGCACACTTCACGAGAAAGTGAGGCGTCTTGAAAAGAAAAGCATTACCGAATTAAAAGACAgg > 1:2830969/1‑150 (MQ=255) aCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAgg > 2:1563226/1‑150 (MQ=255) aCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAgg > 1:652835/1‑150 (MQ=255) tgcctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGGGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAGAACCATTACCGAGTTAAGAGACAGGCaaaa > 1:5038623/1‑150 (MQ=255) cctggcAGAAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATg < 1:4068901/150‑1 (MQ=255) cctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATg > 2:1926388/1‑150 (MQ=255) cctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCAAGTTAAGAGACAGGCAAAATg > 1:3532999/1‑150 (MQ=255) ctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGc > 1:473522/1‑150 (MQ=255) ctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGc < 1:3905628/150‑1 (MQ=255) gcagTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATgg < 1:4255845/150‑1 (MQ=255) cagTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGt < 2:3194448/150‑1 (MQ=255) agTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGtt > 2:1327846/1‑150 (MQ=255) agTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTATTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGtt > 1:2509463/1‑150 (MQ=255) gTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTc > 1:432345/1‑150 (MQ=255) tttttCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATg > 1:5216210/1‑150 (MQ=255) ttttCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATgg < 2:4180567/150‑1 (MQ=255) tttctttcTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGa > 2:2290372/1‑150 (MQ=255) ctttctGTAATGGCAGTGCAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAt > 2:2860611/1‑150 (MQ=255) tttctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAtt < 2:2096875/150‑1 (MQ=255) ttctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAttt > 2:1024523/1‑150 (MQ=255) tctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAtttt < 1:4607979/150‑1 (MQ=255) ctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTg > 1:2981320/1‑150 (MQ=255) aTGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTCCTTTg < 2:4625098/150‑1 (MQ=255) cAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTGCTTTGAAgg < 1:4183892/150‑1 (MQ=255) aGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTGCTTTGAAGGa > 2:3048086/1‑150 (MQ=255) aGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTGCTTTGAAGGa > 2:1532432/1‑150 (MQ=255) | CAGTCAGGACTCGGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTGCTTTGAAGGAC > CP006881/2054236‑2054528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |