| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP006881 | 1,663,448 | Δ9 bp | 5.5% | coding (229‑237/795 nt) | U712_08555 → | Flagellar basal‑body rod protein flgG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | = 1663447 | 395 (1.080) | 22 (0.060) | 21/266 | NT | 5.5% | coding (228/795 nt) | U712_08555 | Flagellar basal‑body rod protein flgG |
| ? | CP006881 | 1663457 = | 371 (1.060) | coding (238/795 nt) | U712_08555 | Flagellar basal‑body rod protein flgG | |||||
ACATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1663293‑1663447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaattCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACAGG > CP006881/1663457‑1663605 ACATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCA < 2:4273579/150‑1 CATTGCCAACGTAAATACAGTAGGATTCAAAAGGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCAC < 1:1378405/150‑1 CATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAAGCCTAAGCAAATCGGTTTAGGTTCATCATCTGGCAC > 1:2326315/1‑150 CATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCAC > 1:352417/1‑150 CATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCAC < 1:2227445/150‑1 CATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCAC < 1:2885098/150‑1 ATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACA > 2:4691051/1‑150 TTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGATTAGGTTCATCATCTGGCACAA > 2:3556839/1‑150 tcCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAtt < 2:3532073/148‑3 TGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAAT > 2:2021604/1‑150 GCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTGATCATCTGGCACAATT < 1:4788448/150‑1 GCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATT < 1:391417/150‑1 GCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATT < 2:4554226/150‑1 CGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTC > 2:436831/1‑150 TAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAA > 1:2894332/1‑150 CAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCG < 2:3234800/150‑1 GTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCG < 2:3986522/150‑1 TTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAA < 1:3536271/150‑1 TAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACG < 1:4850748/150‑1 AAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACG > 1:5054035/1‑150 GATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTA > 2:3957024/1‑150 GATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTA > 2:3328375/1‑150 ATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTAC < 1:3017501/150‑1 CGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCG < 2:1732380/150‑1 TTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGA > 2:5016944/1‑150 TCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGAT < 2:306472/150‑1 CTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAG > 2:5086457/1‑150 AACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAG < 2:1025516/150‑1 CAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAG < 2:2411117/150‑1 AAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGC > 1:3629279/1‑150 AACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCA > 2:5553939/1‑150 AATCGGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTA > 1:2050435/1‑150 ATCTGTTTAGGTTCATCATCTGGCACAACTCATTCAACAAGCGCGACACTAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTAT < 1:2165745/150‑1 GGTTTAGGTTCATCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTA < 1:4621636/150‑1 TTTAGGTTCATCACCTGGCACAATTCATTCAACAAGCCCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGA < 1:1372685/150‑1 TCATCTGGCACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGA < 2:2894332/150‑1 ACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTT > 2:3349436/1‑150 ACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTT < 1:2205658/150‑1 ACAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGAGACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTT > 1:4325673/1‑150 CAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTA > 2:1388288/1‑150 CAATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAAGGAACTTCTATTTAGATAATACTGGAACACTGGTTA < 2:4034093/150‑1 AATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTAC < 2:665943/150‑1 AATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTAC < 1:1195052/150‑1 AATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAAGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTAC > 2:957929/1‑150 ATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACA < 2:3259396/150‑1 ATTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACA > 2:2869102/1‑150 TTCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAAGGAACTTCTATTTAGATAATACTGGAACACTGGTTACAG < 1:5380102/150‑1 TCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACAGG < 1:2407248/150‑1 TCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACAGG < 1:1009211/150‑1 ACATTGCCAACGTAAATACAGTAGGATTCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCCGGCGGTTCTGCTGCTGGTGCAACAATCGGCGGAACAAACTCTAAGCAAATCGGTTTAGGTTCATCATCTGGCACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1663293‑1663447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaattCATTCAACAAGCGCGACACAAAGCACAGGAAGAACACTTGATTTAGCAATTGACGGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACAGCTTATACAAGAGCAGGGAACTTCTATTTAGATAATACTGGAACACTGGTTACAGG > CP006881/1663457‑1663605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |