| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,666,671 | T→A | 18.3% | L321* (TTA→TAA) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,666,671 | 0 | T | A | 18.3% | 927.7 / 188.8 | 366 | L321* (TTA→TAA) | U712_08575 | Flagellar motor switch phosphatase FliY |
| Reads supporting (aligned to +/- strand): ref base T (166/133); new base A (36/31); total (202/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.55e-01 | |||||||||||
Only 100 of 375 total aligned reads displayed.
GCCAGTTCAGGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTAAGCCAGG > CP006881/1666522‑1666820 | cAGTTCAGGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTag > 1:2010176/1‑150 (MQ=255) cAGTTCAAGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTag > 2:2056452/1‑150 (MQ=255) gTTCAGGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTagag > 2:455831/1‑150 (MQ=255) ttCAGGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCNGCTTTCGATNACTGTTGAGCTTGGCAGAACGAANAGAAGCGTAAAAGAGATTTTngagn < 1:4520381/150‑2 (MQ=255) ggTTTCNCCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTc < 1:3699093/150‑1 (MQ=255) ttCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGc > 2:2182062/1‑150 (MQ=255) tCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGcc > 2:809575/1‑150 (MQ=255) aCCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCgg < 1:209643/150‑1 (MQ=255) aCCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCgg < 2:1558439/150‑1 (MQ=255) cGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGaa > 2:5783816/1‑150 (MQ=255) cGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGaa < 2:3265399/150‑1 (MQ=255) cGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTAGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGGGATTTTAGAGCTTTCTGCCGGaa > 2:2412359/1‑150 (MQ=255) ggTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAg > 2:3146469/1‑150 (MQ=255) aTTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGtattat < 2:3854643/150‑1 (MQ=255) tttCCGCGTTTTATACAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCg < 1:4339283/150‑1 (MQ=255) tttCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCg < 2:24692/150‑1 (MQ=255) ccGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGc > 1:1438693/1‑150 (MQ=255) cgTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTg < 2:297857/150‑1 (MQ=255) cgTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTg < 1:1602289/150‑1 (MQ=255) gTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGa > 2:4202299/1‑150 (MQ=255) gTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGa > 2:4924781/1‑150 (MQ=255) tGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATaa < 1:1842632/150‑1 (MQ=255) tGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATaa < 1:3628959/150‑1 (MQ=255) aTCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAAt < 2:4413072/150‑1 (MQ=255) tCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAAtt < 1:1925241/150‑1 (MQ=255) tCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAAtt < 2:765947/150‑1 (MQ=255) tCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAAtt < 1:2419948/150‑1 (MQ=255) ccAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAGATTa < 2:266381/150‑1 (MQ=255) aaCGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGcc < 1:4171922/150‑1 (MQ=255) aaCGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGcc > 2:5578011/1‑150 (MQ=255) aaCGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGcc > 2:5037426/1‑150 (MQ=255) cGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCgg > 2:3341562/1‑150 (MQ=255) cGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCgg < 1:1301615/150‑1 (MQ=255) gAAGCTGTACAAGCCCCTATTCATAATCTGGGTATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGt > 2:1828912/1‑150 (MQ=255) gAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGt < 1:5526350/150‑1 (MQ=255) gAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGt > 2:551328/1‑150 (MQ=255) gAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGt < 2:4284666/150‑1 (MQ=255) gTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGGATTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCt > 1:4085112/1‑150 (MQ=255) gTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCt < 1:4911387/150‑1 (MQ=255) gTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCt < 1:4740875/150‑1 (MQ=255) gTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCt < 1:2655901/150‑1 (MQ=255) tACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTg > 2:5163832/1‑150 (MQ=255) tACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTg > 1:127793/1‑150 (MQ=255) aCAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAACAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGt > 1:4589740/1‑150 (MQ=255) cAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTa < 1:671287/150‑1 (MQ=255) cAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTa < 2:512693/150‑1 (MQ=255) aaGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAg < 1:5407306/150‑1 (MQ=255) aGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGa > 2:5308002/1‑150 (MQ=255) ccccTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGata < 1:2379323/150‑1 (MQ=255) ccccTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGata < 1:2615261/150‑1 (MQ=255) ccTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATAtt < 2:3649733/150‑1 (MQ=255) aTTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTa > 2:1349199/1‑150 (MQ=255) cATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGtt > 2:1053187/1‑150 (MQ=255) cATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGtt > 1:2805069/1‑150 (MQ=255) aTAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTa > 2:5377508/1‑150 (MQ=255) tAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTaa > 2:1455550/1‑150 (MQ=255) aaTCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATATATTAGCCGGTGAGCCTGTAGATATTTTAGTTAAt > 1:995057/1‑150 (MQ=255) tCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCa < 1:4654459/150‑1 (MQ=255) tCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCa > 2:1217687/1‑150 (MQ=255) tGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGc > 1:5252568/1‑150 (MQ=255) ggATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCg > 2:5214595/1‑150 (MQ=255) ggATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCg > 1:5676567/1‑150 (MQ=255) tGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCg < 1:5163832/150‑1 (MQ=255) tGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCg < 1:2187668/150‑1 (MQ=255) gCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGt > 1:5054780/1‑150 (MQ=255) tttGGATATCCCTCTTACGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGc < 1:851847/150‑1 (MQ=255) gATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCaaa > 1:296513/1‑150 (MQ=255) atatCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAg < 1:4005107/150‑1 (MQ=255) tatCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAgg > 2:403881/1‑150 (MQ=255) tCCCGCTTTCGATTACTGTTGAGCTTGACAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTACTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGAGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCg < 2:3032038/150‑1 (MQ=255) cccGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGa > 2:5645359/1‑150 (MQ=255) cGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAgg < 2:3543716/150‑1 (MQ=255) cGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCCGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAAGAGAgg > 1:2882069/1‑150 (MQ=255) cTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTc < 1:3209725/150‑1 (MQ=255) cTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTc < 1:1126865/150‑1 (MQ=255) tttCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCg > 2:5273537/1‑150 (MQ=255) tCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTAGCCAAAGGCGAGGTCGtt > 2:958703/1‑150 (MQ=255) gATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGt > 1:3864301/1‑150 (MQ=255) tACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCAt < 2:3727482/150‑1 (MQ=255) tACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCAt < 2:2010176/150‑1 (MQ=255) aCTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCAtt > 2:1759651/1‑150 (MQ=255) cTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTg > 1:1654507/1‑150 (MQ=255) tGTTGAGCTTGGCAGGACGAAGAGTGGCGTAAAAGGGATTTAAGTGCTTTCTGCCGGAAGCATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTga > 2:616855/1‑150 (MQ=255) gTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGAATCGTTGCCAAAGGCGAGGTCGTTGTCATTgaa < 1:3038066/150‑1 (MQ=255) ttGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTgaag < 2:4639288/150‑1 (MQ=255) gAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTgaagaa > 1:1398568/1‑150 (MQ=255) aGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGaaa > 1:579777/1‑150 (MQ=255) cTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAAc > 1:175251/1‑150 (MQ=255) aGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGa > 2:3948588/1‑150 (MQ=255) gAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAg < 1:3341562/150‑1 (MQ=255) gagaAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGt < 1:1015393/150‑1 (MQ=255) cGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGa > 2:4613634/1‑150 (MQ=255) cGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGa > 2:4828778/1‑150 (MQ=255) aaaGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACAtt > 2:845362/1‑150 (MQ=255) aaaGAGATTTAAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACAtt < 2:3449654/150‑1 (MQ=255) agagATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACAtttt > 2:185947/1‑150 (MQ=255) gagaTTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTa < 2:262258/150‑1 (MQ=255) agaTTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTaa < 1:4238914/150‑1 (MQ=255) aTTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTAAGc > 1:5322928/1‑150 (MQ=255) tAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTAAGCCAgg < 2:1642752/150‑1 (MQ=255) | GCCAGTTCAGGTTTCACCGGTGGAATTTTCCGCGTTTGATCCAAACGAAGCTGTACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCCGGTGAGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTCATTGAAGAAAACTTCGGAGTGAGAGTCACTGACATTTTAAGCCAGG > CP006881/1666522‑1666820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |