| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,350,165 | G→T | 9.0% | intergenic (+13/+14) | U712_17215 → / ← U712_17220 | Hypothetical Protein/Phenolic acid decarboxylase padC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,350,165 | 0 | G | T | 9.0% | 810.1 / 17.3 | 338 | intergenic (+13/+14) | U712_17215/U712_17220 | Hypothetical Protein/Phenolic acid decarboxylase padC |
| Reads supporting (aligned to +/- strand): ref base G (186/93); new base T (4/39); total (191/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 345 total aligned reads displayed.
TTGTCGGCCGTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGATACGTT > CP006881/3350018‑3350314 | tGTCGGCCGTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGtt < 2:236704/150‑1 (MQ=255) gTCGGCCGTGGTATGTTTACGGAACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAAACTGGGAAAGAGAAGAAATTCTCTTTTC‑CTGGttt > 1:2757214/1‑150 (MQ=255) cGGCCTTGGTATGTTTACGGGCCACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGttttt < 1:2572170/150‑1 (MQ=255) ggTGGTATGTTTACGGGACACGGTCTATTCCCACCCTTTGCGCTGGACTGGCACCATACTGTTTTTCGGGGGAATTGTGATGGTCCCCACAAACTCAGCAAAAAAAAAACCGGAAAAAGAGAAGTATTTCTCTTTTC‑CGGGTTTTTATGt < 2:5329764/149‑1 (MQ=255) cGTGGTATGTTTAGGGGACTCAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTTTTTTTCGGGGGAATTGTGATGGTTCCCGCATACTCAGAAAAAAGAAAACCCGGAAAAGAGAATTAATTCTCTTTTC‑CGCGTTTTTATGt < 1:413802/150‑1 (MQ=255) gTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGtt > 2:2712658/1‑150 (MQ=255) gTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGtt > 2:5167384/1‑150 (MQ=255) gTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACAAGGAAAAAAGAAATAATTTTCTTTTCTCGGGttttttgtt > 1:5594160/1‑146 (MQ=255) tGTTTAGGGGACACAGTCTATTACCAGCCTATCGGCTGGACTGGCTTCATACTGTTTTTCGCGGGATTTGTGATGGTTCCCGCATACGCAGCAAAAAGAAAACGCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTtattat < 2:4248765/150‑1 (MQ=255) tGTTTACGGGACACAGTCTATTACCACCCTATGCGCTGAACTGGGATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACACAGCAAAAAAAAAACCCGGAAAAGAGAATTAATTCTCTTTTC‑CTGGTTTTTATGTTtattat < 1:4809180/150‑1 (MQ=255) gTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCAGGGAAAGTGAAGTAATTCTCTTTTC‑GGGGTTTTTATGTTTATtata > 1:202710/1‑150 (MQ=255) ttACGGGACACAGTCTTTTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAATTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAAt < 2:4599542/150‑1 (MQ=255) aCGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCGGGAAAAGAGAAGTAATTCTCTTTCC‑CGGGTTTTTATGTTTATTATAATCt < 2:2191502/150‑1 (MQ=255) cGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAAAGAAGTAATTCTCTTTTC‑CCGGTTTTTATGTTTATTTTTATCtt > 1:3106228/1‑150 (MQ=255) cGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCAGGAAAAGAGAAATAATTCTCTTTTC‑CGGGTTTTTTTGCTtattattaattt > 1:1641163/1‑144 (MQ=255) gggACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGGAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTTTTATAATCTTc > 1:3949165/1‑150 (MQ=255) ggACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAATCGGGAAAACAGAAGTAATTCTCTTTTC‑CGGGTTTTTATTTTTATTATAATCTTcc > 1:5518601/1‑150 (MQ=255) gACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTTTTATAATCTTccc > 2:5256078/1‑150 (MQ=255) cacaGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCcgc > 2:4136813/1‑150 (MQ=255) aGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCcgcgcg > 2:2311851/1‑150 (MQ=255) gTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CTGGTTTTTATGTTTATTATAATCTTCCCGCGCGa > 1:2179378/1‑150 (MQ=255) gTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAAACAAGAAAAAAGAAATAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATTATCTTCCCCCGCGa > 1:1304073/1‑150 (MQ=255) tCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAAACAGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGaa > 1:4966529/1‑150 (MQ=255) aCCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCAGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGt > 2:1232872/1‑150 (MQ=255) cAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCt > 1:1944691/1‑150 (MQ=255) cAGCCTATGCGCTGGACTGGCACCATACTGTTTTTCGCGGGAATTGTGATGGTCCCCGCATACTCAGAAAAAAAAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCt < 1:400413/150‑1 (MQ=255) tgcgggACTGGCACTATATTGTTGCTCGAGGAAATTGTGATGGTTCCCCCATACTAAAAAAAAAGAAAACCGGGAAAAGAGAAGTAATTCTCTTTCC‑CTTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTccc < 1:4733702/146‑1 (MQ=255) ggACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCAGAAAAGAGAAGTAATTTTCTTTTT‑CGGGGTTTTATGTTTATTATAAATTTTCGCCGGCAATATCGTCTGTTATTNCCTCAt > 1:3648677/1‑150 (MQ=255) ggACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAACAAAAAGAAAACCGGGAAAAGAGAATTAATTCTCTTTTC‑CCGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCAt < 2:4616951/150‑1 (MQ=255) tGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAgg > 2:3986706/1‑150 (MQ=255) ggCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCTCGAAAAGAGAAGTAATTCTCTTTTC‑CTGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGa > 1:2101423/1‑150 (MQ=255) atcatATTTTTTTTGGAGGGAATTGTCATGGTCCCCCCTTACTCAGCAAAAAAAAACCCAGAAAAAGAGAATTAATTCTTTTTTC‑CTTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGcc < 1:4510751/150‑1 (MQ=255) atcatACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCTGGAAAAGAGAAGTAATTCTCTTTTC‑CTGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGcc > 1:4195015/1‑150 (MQ=255) atcatACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGcc > 1:3893355/1‑150 (MQ=255) tcatACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCt > 1:520510/1‑150 (MQ=255) cTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCGGGAAAAGAGAAGTAATTATCTTTTC‑CGTGTTTTTATGTTTATTATAATCTTTCCCCTCCAATAACTTGTGTCATTACCTCATAAAGAGGCTTCGaa > 1:1491285/1‑150 (MQ=255) gTTTTCCGCGGGATTTTTGATGGTCCCCGCACCCTGAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTGC‑CGCGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAAt < 1:3715973/150‑1 (MQ=255) cgcgGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTGATTCCCTCATAAGGAGACTTCGAAATCActtc > 1:878819/1‑150 (MQ=255) cgGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCActtctt > 2:4282351/1‑150 (MQ=255) cgGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCActtctt > 1:1009340/1‑150 (MQ=255) cgGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAAAAAACCCGGAAAAGAGAAGTAATTTTCTTTTC‑CTAGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCActtctt < 2:4317430/150‑1 (MQ=255) gggTATTGTGATGGTTCCCGCATACTCAGCAAAAAAAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACttcttc < 2:2774647/150‑1 (MQ=255) gggAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGTATATCGTCTGTCATTCCCTCATAAGGAGCCTTCTCAATCACttcttc > 1:2981583/1‑150 (MQ=255) gggAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACttcttc > 2:4433713/1‑150 (MQ=255) ggAATTGTGATGATTCCCACATACTCAGAAAAAAGAAAACACGGAAAAGACAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCTCGAATATCGACTGTCATTCCCTCATAAGGAGCCTTCAAAATCAATTCTTCg > 1:1822727/1‑150 (MQ=255) gaaaTTGTGATGGTTCCCGCATACTCAGCAAAAAAAAAACCGGGAAAAGAGAAGTATTTCTTTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCg < 2:3271588/148‑1 (MQ=255) gAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACAAGGAAAAGAGAAGTAATACTTTTTTT‑CTGGTTTATATGTTTATTATAATCTTCCCGCGCGAATATTGTCTGTCATTCCCTCAAAAGGAGCCTATGAAATCACTTCTTCGt > 1:5074359/1‑150 (MQ=255) aaTTGTGATGGTTCCCGCATACTCAGAAAAAAGAAAACCCGAAAAAGAGAAGTAATTCTCTTTCC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGtt < 2:4973076/150‑1 (MQ=255) aaTTGTGATGGTCCCCGCATACCCACAAAAAAAAAAACCGGAAAAAGAGAAGTAATTCTCTTTTC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGtt < 2:3207780/150‑1 (MQ=255) aaTTGTCATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAATAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTTCCTCATAAGGAGCCTTTGAAATCACTTCTTCGtt > 1:3799477/1‑150 (MQ=255) ttGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGt < 2:3155134/150‑1 (MQ=255) gtgATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGGCg > 2:2837147/1‑150 (MQ=255) aTGGTTCCCGCATACTCAGCAAAAAGAAAACCAGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCCTTGTCGACt > 1:2239849/1‑150 (MQ=255) aTGGTTCCCGCATACACAGAAAAAAGAAAACCGGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACt < 2:1011208/150‑1 (MQ=255) ttCCCGCATACTCAGAAAAAAGAAAACCGGAAAAAGAGAAGTAATTCTTTTTTC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCtt < 2:1413080/150‑1 (MQ=255) ttCCCGCATAATCAGCAAAAAGAAAACCCGGAAAAGAGAAATTAATCTCTTTTC‑CGAGTTTTTATGTTTATTATATTCTTCCCCCGCGAATATCGTCTGTCATTCTCTCATAAGGCACCTTCGAAATCACTTATTCGGTGTAAACTCCtt > 2:2121010/1‑150 (MQ=255) cccGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCa > 1:799693/1‑150 (MQ=255) cccGCATACTCAGCAAAAAGAAAACATGGAAAACAGAAATAATTTTCATTTC‑CGGGTTTTTATGTTTATTATAATGTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTGCTTCa > 1:2806262/1‑150 (MQ=255) cccATACTCAACAAAAAGAAAACCGAAAAAAAGGAAGTAATCTTCTTTTC‑AGCGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCAtt < 1:2504382/148‑1 (MQ=255) cGCATACTCAGCAAAAAGAAAACCCGGGAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCAtt > 2:3720801/1‑150 (MQ=255) cATCCTCAGAAAAAAGAAAACCCGAAAAAGAGAAGTAATTCTTTTTTC‑TATGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCAtttt < 1:4277443/150‑1 (MQ=255) tACACAGAAAAAAAAAAACCGGAAAAAGAGAAGTATTTCTTTTTCC‑TTTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTc < 2:3421497/150‑1 (MQ=255) ctaagaaaaaaaaaaaCCAGAAAAAGAGAAGTATTTCTTTTTCC‑AGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAg < 2:1852134/144‑1 (MQ=255) cTCAGAAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAg < 2:2594253/150‑1 (MQ=255) cAGCAAAAAGAAAACCCGAAAAAGAGAAGTAATTTTCTTTCC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGaa < 2:3765630/150‑1 (MQ=255) aacAAAAAGAAACCCCGAAAAAGAGAAGTAATTCTCTTTTC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGaaa < 2:3106228/148‑1 (MQ=255) aGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGaaa > 1:3414869/1‑150 (MQ=255) gCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCTTTCATTTTTCAGAAAt > 1:4638172/1‑150 (MQ=255) acAAAAAAAAAACCGGAAAAAGAGAATTTATTCTCTTTTC‑TGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAAt < 2:5829595/149‑1 (MQ=255) cAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGGTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCCTTGTCGACTTCTTCATTTTTTAGTAATg > 2:828453/1‑150 (MQ=255) aaaaaGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCTCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGt > 1:4444512/1‑150 (MQ=255) aGAAAACCCGGAAAAGAGAAGTAATTCTTTTTTC‑TGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAAtt < 2:2241227/150‑1 (MQ=255) aaaCCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTcc > 2:1766277/1‑150 (MQ=255) ggAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAAt > 1:961595/1‑150 (MQ=255) gAAAAGAGAAGTAGTTCTCTTTCC‑CGCGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAAtt < 2:633554/150‑1 (MQ=255) gAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAAtt > 2:2080143/1‑150 (MQ=255) aaaagaaaagTAGTTTTTCTTCC‑TGCGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTc < 2:1274999/150‑1 (MQ=255) aaaaGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTc > 2:505657/1‑150 (MQ=255) aaaaGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGAAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTc > 1:5163534/1‑150 (MQ=255) agagAAGTATTTCTCTTTCC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAgg < 2:4498691/150‑1 (MQ=255) agagAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAgg > 2:893964/1‑150 (MQ=255) agaAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTa > 1:2670212/1‑150 (MQ=255) gaAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTAc > 1:4793839/1‑150 (MQ=255) agttAATCCTCTTTAC‑TTCGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACACCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACa < 1:5174243/147‑1 (MQ=255) aaGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACa < 2:4866123/150‑1 (MQ=255) aGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACaa > 2:2913820/1‑150 (MQ=255) aGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACaa > 2:4756764/1‑150 (MQ=255) gTAATTTTCTTTTC‑CGTGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAAc < 2:5427180/150‑1 (MQ=255) gTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGaacaac > 1:5806002/1‑150 (MQ=255) tAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACg > 1:5290690/1‑150 (MQ=255) aTTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTa > 1:1736072/1‑150 (MQ=255) ttCTCTTTTC‑CTGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTAt < 2:1944691/150‑1 (MQ=255) ctctTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGGGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTAttt > 1:68553/1‑150 (MQ=255) tctTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTCCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTAtttt > 1:4085230/1‑150 (MQ=255) ttttC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTgg > 1:1195361/1‑150 (MQ=255) ttC‑CTGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGAt < 2:1491285/150‑1 (MQ=255) ttC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGAt > 1:4853550/1‑150 (MQ=255) c‑cGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGATAc < 2:2743244/150‑1 (MQ=255) ctggTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGATACg < 2:5628972/148‑1 (MQ=255) gggTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGATACGt > 1:5780765/1‑150 (MQ=255) | TTGTCGGCCGTGGTATGTTTACGGGACACAGTCTATTACCAGCCTATGCGCTGGACTGGCATCATACTGTTTTTCGCGGGAATTGTGATGGTTCCCGCATACTCAGCAAAAAGAAAACCCGGAAAAGAGAAGTAATTCTCTTTTC‑CGGGTTTTTATGTTTATTATAATCTTCCCGCGCGAATATCGTCTGTCATTCCCTCATAAGGAGCCTTCGAAATCACTTCTTCGTTGTCGACTCCTTCATTTTTCAGAAATGTAATTTCCGCAAATTCAGGTACAACGTATTTTGGATACGTT > CP006881/3350018‑3350314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |