New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2305015161 (1.150)16 (0.170)
+CTACGGGGTGGAGCACTTCACAGCGGTGTAGGC		 4/130 15.3 13.1% noncoding (599/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305065 NA (NA)noncoding (649/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 154 total aligned reads displayed.

AAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTT  >  NC_000913/2304968‑2305163
                                                                                                 |                                                                                                  
 aGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCa                                                                                                  <  1:1230721/99‑1 (MQ=255)
   tGCTCCACCCCATAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATa                                                                                                >  1:1134228/1‑99 (MQ=255)
     cTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGCCACTGGCGCGTCTTATCAGCATACg                                                                                              >  2:3298577/1‑99 (MQ=255)
     cTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACg                                                                                              >  2:1629456/1‑99 (MQ=255)
      tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGc                                                                                             <  1:3403796/99‑1 (MQ=255)
      tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGc                                                                                             <  1:1267574/99‑1 (MQ=255)
       ccACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGcc                                                                                            >  2:2749497/1‑99 (MQ=255)
       ccACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGcc                                                                                            >  2:2749740/1‑99 (MQ=255)
        cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCca                                                                                           <  2:774225/99‑1 (MQ=255)
        cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCca                                                                                           >  1:1558358/1‑99 (MQ=255)
        cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCca                                                                                           <  2:333787/99‑1 (MQ=255)
        cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCca                                                                                           >  2:2622133/1‑99 (MQ=255)
           cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGc                                                                                             >  2:663164/1‑94 (MQ=255)
           cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGc                                                                                             <  1:663164/94‑1 (MQ=255)
             cGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCATATCAGCATACGCCACATcc                                                                                      <  1:2318039/99‑1 (MQ=255)
             cGTAGGTTGGAGAAGGCGGTTCCGCCGCATCCACCATCTAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATcc                                                                                      <  1:2882666/99‑1 (MQ=17)
              gTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCATATCCg                                                                                     >  2:1364536/1‑99 (MQ=255)
                  gTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAt                                                                                 <  1:1581221/99‑1 (MQ=255)
                  gTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAt                                                                                 <  2:1311815/99‑1 (MQ=255)
                  gTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAt                                                                                 <  2:1311542/99‑1 (MQ=255)
                    tGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATAc                                                                               >  2:1179115/1‑99 (MQ=255)
                     ggATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATAcc                                                                              >  1:746687/1‑99 (MQ=255)
                      gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCa                                                                             >  2:3335581/1‑99 (MQ=255)
                      gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCa                                                                             <  2:576797/99‑1 (MQ=255)
                      gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCa                                                                             <  2:577067/99‑1 (MQ=255)
                        tAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATg                                                                           <  2:804533/99‑1 (MQ=255)
                         aaGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGc                                                                          >  1:1702731/1‑99 (MQ=255)
                         aaGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGc                                                                          <  1:834264/99‑1 (MQ=255)
                            gCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCgg                                                                       >  2:2871826/1‑99 (MQ=255)
                             cGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATGGTATGCCGGa                                                                      <  1:2005257/99‑1 (MQ=18)
                             cGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGa                                                                      <  2:2161718/99‑1 (MQ=255)
                              ggTTACGCCGCATCCGACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATGGTATGCCGGAt                                                                     <  1:1049254/99‑1 (MQ=17)
                              ggTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGAt                                                                     <  1:2923600/99‑1 (MQ=255)
                              ggTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGAt                                                                     >  2:366484/1‑99 (MQ=255)
                              ggTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGAt                                                                     <  1:2083533/99‑1 (MQ=255)
                               gTTACGCCGCATCCAACATCTAACGCCCGAGTCGGTTCCCTGAGGCGACGCCGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCCGAtg                                                                    >  2:259143/1‑99 (MQ=21)
                               gTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATGGTATGCCGGAtg                                                                    <  1:931856/99‑1 (MQ=18)
                                 tACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATGGTATGCCGGAtgtg                                                                  <  1:413981/99‑1 (MQ=18)
                                  aCGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTgg                                                                 <  2:732590/99‑1 (MQ=255)
                                  aCGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTgg                                                                 >  1:65617/1‑99 (MQ=255)
                                   cgccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGc                                                                <  1:1005349/99‑1 (MQ=255)
                                     ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGCTGCGACGCTGGCGCGTCTTATCCGCATACGCCCCATCCGGCATACCATGCCGGCAGTGGCGt                                                              >  2:1790531/1‑99 (MQ=21)
                                     ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCATCATACGCCACATCCGGCATACCATGCCGGATGTGGCGt                                                              >  2:1858997/1‑99 (MQ=255)
                                     ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATCCGCCACATCCGGCATACCATGCCGGATGTGGCGt                                                              >  2:2469820/1‑99 (MQ=255)
                                     ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGt                                                              >  1:225698/1‑99 (MQ=255)
                                        cATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATc                                                           <  1:2501263/99‑1 (MQ=255)
                                        cATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATc                                                           <  1:1834546/99‑1 (MQ=255)
                                           ccAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCAtt                                                        <  2:2527087/99‑1 (MQ=255)
                                           ccAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCAtt                                                        <  1:1989773/99‑1 (MQ=255)
                                            cAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTa                                                       >  2:2722156/1‑99 (MQ=255)
                                             aaCATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCTACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTAc                                                      >  2:2485394/1‑99 (MQ=255)
                                             aaCATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTAc                                                      >  1:407137/1‑99 (MQ=255)
                                             aaCATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTAc                                                      <  1:2778805/99‑1 (MQ=255)
                                                aTCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAAc                                                   >  1:1215662/1‑99 (MQ=255)
                                                aTCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCTCCCCCCCCTCCGGCGTACCCCGCCGCGTGTGGCGTATCATTACAAc                                                   >  2:1687373/1‑99 (MQ=17)
                                                 tccaaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGAt                                                                     >  2:2763977/4‑80 (MQ=255)
                                                 tCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCGTACCATGCCGGATGTGGCGTATCATTACAACg                                                  <  1:359938/99‑1 (MQ=255)
                                                 tCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGAt                                                                     <  1:2763977/80‑1 (MQ=255)
                                                  cTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGc                                                 <  1:2392208/99‑1 (MQ=255)
                                                   caaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCa                                                <  2:961993/98‑1 (MQ=255)
                                                     aCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAat                                              >  2:2552246/1‑99 (MQ=255)
                                                         ccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATcc                                          <  2:1870321/99‑1 (MQ=255)
                                                             gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCa                                      <  1:2571780/99‑1 (MQ=255)
                                                              ccGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCAc                                     >  2:2457446/1‑99 (MQ=255)
                                                               cGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCAct                                    <  2:2671893/99‑1 (MQ=255)
                                                                ggTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCActt                                   <  2:597114/99‑1 (MQ=255)
                                                                  ttGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGCTGTGGCGTATCATTACAACGCAATATCCGCCActtct                                 >  2:2436790/1‑99 (MQ=255)
                                                                  ttGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCActtct                                 >  2:3306621/1‑99 (MQ=255)
                                                                     ccTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCtttt                              <  2:349862/99‑1 (MQ=255)
                                                                     ccTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCtttt                              <  2:3379003/99‑1 (MQ=255)
                                                                     ccTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCtttt                              <  1:1234444/99‑1 (MQ=255)
                                                                      cTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCttttt                             <  1:2620394/99‑1 (MQ=255)
                                                                      cTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCttttt                             <  2:3180246/99‑1 (MQ=255)
                                                                         aTGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGaa                          <  1:556025/99‑1 (MQ=255)
                                                                          tGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCACCACTTCTTTTTGAAc                         <  2:2971112/99‑1 (MQ=255)
                                                                           gCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACg                        >  1:2851844/1‑99 (MQ=255)
                                                                             gACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACggg                      >  2:673018/1‑99 (MQ=255)
                                                                             gACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACggg                      >  2:1256176/1‑99 (MQ=255)
                                                                             gACGCTGGCGCGTCTTATCAGCATACGCAACATCCGGCATACAATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCGCTTCTTTTTGAACggg                      >  1:1661588/1‑99 (MQ=255)
                                                                               cGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGtt                    <  1:692721/99‑1 (MQ=255)
                                                                                gCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTg                   >  2:1171835/1‑99 (MQ=255)
                                                                                gCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTg                   >  2:1380783/1‑99 (MQ=255)
                                                                                 cTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGc                  <  1:2906316/99‑1 (MQ=255)
                                                                                   ggCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCgg                >  2:620412/1‑99 (MQ=255)
                                                                                    gcgcGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGt               >  1:1669293/1‑99 (MQ=255)
                                                                                      gcgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGGGGttt             <  2:1738124/99‑1 (MQ=255)
                                                                                      gcgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGttt             >  2:2877808/1‑99 (MQ=255)
                                                                                      gcgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGttt             <  2:3111459/99‑1 (MQ=255)
                                                                                      gcgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGttt             <  2:3111886/99‑1 (MQ=255)
                                                                                       cgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAGCGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc            <  2:1057076/99‑1 (MQ=255)
                                                                                       cgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc            <  2:1057193/99‑1 (MQ=255)
                                                                                       cgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc            <  1:1721739/99‑1 (MQ=255)
                                                                                       cgTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc            <  1:1721842/99‑1 (MQ=255)
                                                                                         tCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCaa          <  1:1870471/99‑1 (MQ=255)
                                                                                             aTCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGc      <  1:1288482/99‑1 (MQ=255)
                                                                                              tCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCg     <  1:2068048/99‑1 (MQ=255)
                                                                                              tCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCg     <  2:2268263/99‑1 (MQ=255)
                                                                                                aGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGt   >  1:2280878/1‑99 (MQ=255)
                                                                                                 gCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGtt  <  2:819548/99‑1 (MQ=255)
                                                                                                 gCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGCTTCCACTGCGGtt  >  2:1981670/1‑99 (MQ=255)
                                                                                                 |                                                                                                  
AAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCATACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTT  >  NC_000913/2304968‑2305163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.