BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1287084	128 (0.520)	10 (0.050)	7/238	NT	7.7%	noncoding (153/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
*	?	NC_000913	1287557 =	129 (0.610)	10 (0.050)	7/238	NT	7.7%	noncoding (66/85 nt)	tyrT	tRNA‑Tyr

Only 100 of 182 total aligned reads displayed.

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

gTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGATCGAGCCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGATTGAGATTTCATTGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       <  1:2680623‑M1/150‑1 (MQ=255)

gTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       <  2:3655242‑M1/150‑1 (MQ=255)

gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       <  1:725287‑M1/150‑1 (MQ=255)

   gtcgCCCGCGGCAACTCTCTCTCGCTGACGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                                    <  2:3347059/147‑1 (MQ=255)

   gTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGGTGGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                                                                                                                                                    >  2:2105808‑M1/1‑147 (MQ=255)

    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATATTTGATTGCGGATTCGCTTGTGAGTTCAGGGACTTTTGAATGTGATGGTGGTGGGGGAAGGATTACTc                                                                                                                                                   >  2:927851/1‑150 (MQ=255)

       ccTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                                                                                >  2:1796048/1‑150 (MQ=255)

              cAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGACGAGTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAACGTGATGGTGGGGGGGGAAGGATTACTCAGCGCTgcgc                                                                                                                                         >  2:1569382/1‑150 (MQ=17)

               aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                                                                        >  2:1814007/1‑150 (MQ=255)

               aaCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCACCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                                                                        >  2:1813925/1‑150 (MQ=255)

                aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTATCAACCTTCCCCCCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTTATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcgc                                                                                                                                       >  1:89105/1‑150 (MQ=255)

                  gCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt                                                                                                                                     >  2:2115563/1‑150 (MQ=255)

                   ctctctCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgcgcttcgcgcttc                                                                                                                                    >  2:413047/1‑150 (MQ=255)

                     ctctcGCTGTCGCTCGAGCGGCACCATAGTCGAATACACTCATGCCTACCCTCTTTGGCATAATCTCTGTTTTCGGATTTGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                                                                                                                                  <  2:3425170/150‑1 (MQ=9)

                      tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCATCTCATCCTTCCCCCCATGGGCAGAATATTTGATTTCGGATTAGCTTGGGAGTTCAGGGACTTTTGAAATTGATGGTGGTGGGGGAAGGATTAAACACCGCTGCGCGCTTCGcc                                                                                                                                 >  1:2358754/1‑150 (MQ=17)

                          gCTGGCGCTCTAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                                             <  1:1524612/150‑1 (MQ=255)

                               cGCTCGAGCCTAACGTTTGTGGATTCTTCGGATACTTCCACTCTTGGGCAGACTATTTGAGTGCGGATTCGCTTTAGCGTCCTGGGAATTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc                                                                                                                        <  2:2211423/150‑1 (MQ=9)

                               cGCTCGAGCCGAACCTTTGTCGAAGCTACTCATCCTTCCCCTCTTGGGCAGAATATTTGATTGCGGTTTCGCTTTAGACTACCGGTAATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc                                                                                                                        <  2:176929/150‑1 (MQ=11)

                                gCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACACCGCGGCGACCATCGCCCGTCGGGTcc                                                                                                                       >  2:2064087/1‑149 (MQ=17)

                                    gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc                                                                                                                   >  1:371096/1‑150 (MQ=255)

                                    gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc                                                                                                                   >  2:3147531/1‑150 (MQ=255)

                                    gAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc                                                                                                                   <  2:2891865/150‑1 (MQ=255)

                                        cGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGc                                                                                                               >  2:1914808/1‑150 (MQ=255)

                                          aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGcag                                                                                                             >  2:1671648/1‑148 (MQ=255)

                                                 gTCGAAGCTTCTGCTCCTTCCCCGATGGGGCATATGAATTGATTGGGGATTCGCTAGAGCTTTCAGGGACTTTTGAAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                      <  2:3086052/150‑1 (MQ=11)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCatagca                                                                                                      >  2:3863113/1‑145 (MQ=255)

                                                 gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                                      >  1:3913579/1‑150 (MQ=255)

                                                     aaGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctctct                                                                                                  >  1:2605230/1‑150 (MQ=255)

                                                        cTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGGCGTTGCCTGCGGCAACGCtcgctcgc                                                                                               >  2:3600935/1‑150 (MQ=255)

                                                         ttCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGTTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                                                                              <  1:58803/150‑1 (MQ=255)

                                                         ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                                                                              >  2:258579/1‑150 (MQ=255)

                                                          tctcCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTg                                                                                             <  2:32148/150‑1 (MQ=255)

                                                          tctcATCCCTCCCCGCAAGTGCATAATATATGCTGGCTGTTTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTg                                                                                             <  2:32073/150‑1 (MQ=14)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGa                                                                                     >  1:1976388/1‑150 (MQ=255)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCTCCCTTCGGGTCGTTTCATGCGGCAACGCTATCTCGCTGGCGATCGa                                                                                     >  2:2540443/1‑150 (MQ=14)

                                                                  ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCGGCCGCAACGCTCTCTCGCTGGCGCACGa                                                                                     >  2:1506173/1‑150 (MQ=14)

                                                                   tCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTCCCGCAACGCACTCTCGCAGgcgcacccg                                                                                    >  2:735737/1‑145 (MQ=14)

                                                                   tCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGCTCGGAGACCTTCGCCCATCTGGTCGTTGCAGCCCGCAACGCTCTCACACAGGCGCTCCAg                                                                                    >  2:4154572/1‑150 (MQ=14)

                                                                     cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTTCGCGCATCTCCCTTCTGGTCGTTGCATGCGGCAACGCACTCTCGCTGACGCTCGAGTc                                                                                  >  2:3097034/1‑150 (MQ=14)

                                                                            gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCCGGCGCACGACACGAACCtt                                                                           >  1:3357323/1‑150 (MQ=14)

                                                                             ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTTAAAGTGATGGTGTTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTg                                                                          <  1:1157548/150‑1 (MQ=255)

                                                                              gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTgg                                                                         >  1:1013877/1‑150 (MQ=255)

                                                                              gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTgg                                                                         >  2:2737999/1‑150 (MQ=255)

                                                                               cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGt                                                                        <  1:1914808/150‑1 (MQ=255)

                                                                                aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                                       >  1:4050104/1‑150 (MQ=255)

                                                                                   atatTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                    <  1:1796048/150‑1 (MQ=255)

                                                                                      tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCt                                                                 >  2:542861/1‑150 (MQ=255)

                                                                                      tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAATCt                                                                 >  2:2224575/1‑150 (MQ=255)

                                                                                        tGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTtc                                                               <  1:1704814/150‑1 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCCGCAACGCTATAACGCGGGCGCGCGAGTCGAACCGTTGGCGAAACTTCTCa                                                            >  1:101250/1‑150 (MQ=14)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCAtcgaa                                                            >  2:3507763/1‑147 (MQ=255)

                                                                                           ttGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCGTCGCCCTTCGGGTCGTTGCCAGCGGCCACCCTCTCTCGCTGGCGCTCGAGTAGAACCTTGGTCGTAGCTTCTCa                                                            >  1:4046545/1‑150 (MQ=14)

                                                                                             gCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATc                                                          >  2:2144739/1‑150 (MQ=255)

                                                                                                gATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGACGCTTCTCATCCtt                                                       >  2:2380090/1‑150 (MQ=255)

                                                                                                   tCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCGGGCGCACCAGTCGAACCATGGTAGAAGCTTATCAAccatacc                                                    >  1:3950526/1‑145 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCTCCCTTCGGGTCGTTGCCGGAGGCAACGCTCTCTCGCTGGCGCTCGAATCGAACCTTAGTCGAAGGTTCTCAACCATCCCCGcg                                                >  2:2805/1‑149 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                                <  1:1437241/150‑1 (MQ=255)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCCACCCTCACACGCTGGCGCACGAATCGAACCTTGGTCGAAGCTTCTCATCCTTACCCCCa                                                >  1:357066/1‑150 (MQ=14)

                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTAGCTGGCGCGCGAGTAGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGcc                                                >  2:2454636/1‑149 (MQ=255)

                                                                                                          gaagttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcggga                                             >  2:1654845‑M1/3‑44 (MQ=255)

                                                                                                          agagTTCAGGGACTTTTGAATGTGATGGTGGTGGTGGAAGTATGACTCCGCGCTGCGCGCTTGGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATgg                                             <  1:2472891/150‑1 (MQ=14)

                                                                                                             gTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagc                                          >  2:552754‑M1/1‑41 (MQ=255)

                                                                                                               tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcgg                                        <  1:552754‑M1/150‑112 (MQ=255)

                                                                                                                cAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGaa                                       <  1:1813980/150‑1 (MQ=40)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggc                                                              >  2:3699676‑M1/1‑37 (MQ=255)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggc                                                              <  1:3699676‑M1/126‑90 (MQ=255)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCATCTCATCCATCCCCGCCAGGGCAGAat                                      >  2:4007184/1‑150 (MQ=255)

                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACACTAGCAGGCGCGCGAGTCGAACATTGGTCGAATCTTCTCAAACTTACCCGCAAGGGCAGaaa                                      >  1:1188514/1‑149 (MQ=14)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTaa                                <  1:852489/150‑1 (MQ=38)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCATGGTCGAAGCTTCTCAAACATCCCCGCATTGGCCCAAGATTTaa                                >  1:3106003/1‑150 (MQ=11)

                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCAGTCGCACGACTCGAACCATGGTCGAAGCTTCTAAAACATACCCCCATGGGCAGAaaataaaa                                >  1:230299/1‑146 (MQ=11)

                                                                                                                          tGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcata                             >  2:738102‑M1/1‑28 (MQ=255)

                                                                                                                            tgattgatgGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatc                           <  1:2144956‑M1/146‑125 (MQ=255)

                                                                                                                             aaGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccatcacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatca                          <  1:290435‑M1/150‑126 (MQ=255)

                                                                                                                                 gagggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                                     <  1:3017470/116‑1 (MQ=17)

                                                                                                                                 gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                                     >  2:3017470/1‑119 (MQ=32)

                                                                                                                                    ggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgcttt                                                                      >  2:839668‑M1/1‑18 (MQ=255)

                                                                                                                                    ggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgcttt                                                                      <  1:839668‑M1/99‑82 (MQ=255)

                                                                                                                                     gtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgc                  <  1:3754377‑M1/150‑134 (MQ=255)

                                                                                                                                      tggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg                 <  1:1494173/150‑1 (MQ=38)

                                                                                                                                       ggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccttttgccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgc                <  2:2037051‑M1/150‑136 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcc               >  1:3461567‑M1/1‑14 (MQ=255)

                                                                                                                                        gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                            <  1:2521407/105‑1 (MQ=32)

                                                                                                                                         tcggggaaGGGTGagaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccg              >  1:2692479‑M1/3‑13 (MQ=255)

                                                                                                                                           ggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttctcgggaagcggggcgcatcatctcaaatgacgcgccgct            >  2:1414240‑M1/1‑11 (MQ=255)

                                                                                                                                           ggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgct            >  2:3463702‑M1/1‑11 (MQ=255)

                                                                                                                                            ccgAACGAGTACTCCGCGCTCCGCGCTCCTCCCTTCTGCTCGTTGAGTGCGGCGAGGCTATATCTGTGCAGGTCGGCTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGtt           <  1:1894260/148‑1 (MQ=9)

                                                                                                                                             ggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgt          >  2:879445‑M1/1‑9 (MQ=255)

                                                                                                                                             ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCCGAATATTTAATAGCGGATTGGTTGGGAAggta          >  2:2962372/1‑147 (MQ=14)

                                                                                                                                             ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCACACGCTGGCGCTCGAGTCGAACCGTGGTCGAATCGTCAAATACATACCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc          >  2:1443299/1‑150 (MQ=14)

                                                                                                                                               aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAg        <  1:3147531/150‑1 (MQ=255)

                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttctcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa       >  2:1160457‑M1/1‑6 (MQ=255)

                                                                                                                                                aGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCTGCAACGCTCTCTCGCTGGCGATCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg       <  2:3750758/150‑1 (MQ=255)

                                                                                                                                                aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg       <  2:2135617/150‑1 (MQ=255)

                                                                                                                                                 ggATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaag      >  2:945801‑M1/1‑5 (MQ=255)

                                                                                                                                                 ggATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcct                                                            >  1:3520980‑M1/1‑5 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgt   >  1:3668753‑M1/1‑2 (MQ=255)

                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgt   >  1:906465‑M1/1‑2 (MQ=255)

                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgtt  <  2:3534488‑M1/150‑150 (MQ=255)

                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtgtt  <  1:2555256‑M1/150‑150 (MQ=255)

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.